miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31661 5' -56.4 NC_006883.1 + 22231 0.8 0.309565
Target:  5'- aGGAGGACCacUUGGACCAucUGGACCu -3'
miRNA:   3'- -CCUCCUGGacGACCUGGUcuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 22913 0.8 0.309566
Target:  5'- --uGGACCUGCUGGuCCuGAUGGuCCa -3'
miRNA:   3'- ccuCCUGGACGACCuGGuCUACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 23058 0.67 0.939835
Target:  5'- -aAGGuCCUGCUGGuucuCCAGGuccaacUGGuCCu -3'
miRNA:   3'- ccUCCuGGACGACCu---GGUCU------ACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 23136 0.72 0.707638
Target:  5'- -cAGGuCCaaCUGGACCAGAUGGuCCu -3'
miRNA:   3'- ccUCCuGGacGACCUGGUCUACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 23155 0.77 0.468162
Target:  5'- uGGAGcACCaGCaGGACCAGuUGGACCu -3'
miRNA:   3'- -CCUCcUGGaCGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23200 0.76 0.523346
Target:  5'- aGGAGGACCacUUGGACCAucaGGACCa -3'
miRNA:   3'- -CCUCCUGGacGACCUGGUcuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23230 0.85 0.177443
Target:  5'- uGGAGGACCaccaGCaGGACCAGGaGGACCa -3'
miRNA:   3'- -CCUCCUGGa---CGaCCUGGUCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23274 0.67 0.943805
Target:  5'- uGAGGACCaggagcaccaucaUcaccaGCaGGACCAGuUGGACCn -3'
miRNA:   3'- cCUCCUGG-------------A-----CGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23310 0.76 0.513027
Target:  5'- uGAGGACCaGUUGGACCAccGAUaccuggaGGACCu -3'
miRNA:   3'- cCUCCUGGaCGACCUGGU--CUA-------CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23354 0.76 0.513961
Target:  5'- -aAGGACCUaCaGGACCAGuUGGACCu -3'
miRNA:   3'- ccUCCUGGAcGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23387 0.85 0.177443
Target:  5'- -uGGGACCUGUgGGACCAGuUGGACCu -3'
miRNA:   3'- ccUCCUGGACGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23410 0.68 0.914552
Target:  5'- uGGAccuGGuCCUGCUGGuccuCCAGGuccaucUGGuCCa -3'
miRNA:   3'- -CCU---CCuGGACGACCu---GGUCU------ACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 23425 0.77 0.459252
Target:  5'- uGGuGGACCUGUaggaccaucUGGuCCAGuUGGACCu -3'
miRNA:   3'- -CCuCCUGGACG---------ACCuGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23686 0.79 0.383459
Target:  5'- uGGAGGACCaGCaGGACCAGGUccACCa -3'
miRNA:   3'- -CCUCCUGGaCGaCCUGGUCUAccUGG- -5'
31661 5' -56.4 NC_006883.1 + 23713 1.13 0.002596
Target:  5'- uGGAGGACCUGCUGGACCAGAUGGACCu -3'
miRNA:   3'- -CCUCCUGGACGACCUGGUCUACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23731 0.74 0.600342
Target:  5'- aGGAGGACCUGCUGGACCn-------- -3'
miRNA:   3'- -CCUCCUGGACGACCUGGucuaccugg -5'
31661 5' -56.4 NC_006883.1 + 23911 0.73 0.659134
Target:  5'- -uAGGACCUGCUGGACCuGuu-GAUCc -3'
miRNA:   3'- ccUCCUGGACGACCUGGuCuacCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23937 0.82 0.264615
Target:  5'- --cGGACCaGUUGGACCAGuUGGACCu -3'
miRNA:   3'- ccuCCUGGaCGACCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 24969 0.76 0.504647
Target:  5'- --uGGACCUGaUGGACCAcuUGGACCu -3'
miRNA:   3'- ccuCCUGGACgACCUGGUcuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 25008 0.86 0.142437
Target:  5'- uGGAGGACCUGgaGGACCgcuaGGAccacuUGGACCa -3'
miRNA:   3'- -CCUCCUGGACgaCCUGG----UCU-----ACCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.