Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31661 | 5' | -56.4 | NC_006883.1 | + | 211383 | 0.7 | 0.816125 |
Target: 5'- -aAGGACCUcaucCUGGACCAGGuUGGAa- -3' miRNA: 3'- ccUCCUGGAc---GACCUGGUCU-ACCUgg -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 21596 | 0.7 | 0.829208 |
Target: 5'- --uGGACCUGCUGGuCCuccugguccugcuGGUGGuCCu -3' miRNA: 3'- ccuCCUGGACGACCuGGu------------CUACCuGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 21929 | 0.69 | 0.870103 |
Target: 5'- uGGuccuGGuCCUGCUGGuCCuccaggucAGAUGGuCCa -3' miRNA: 3'- -CCu---CCuGGACGACCuGG--------UCUACCuGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 21979 | 0.69 | 0.870103 |
Target: 5'- --uGGuCCUGCUGGAUCuGcUGGugCg -3' miRNA: 3'- ccuCCuGGACGACCUGGuCuACCugG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 192092 | 0.69 | 0.870103 |
Target: 5'- ---uGGCCUGCUGGugUAGGUGGu-- -3' miRNA: 3'- ccucCUGGACGACCugGUCUACCugg -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 28501 | 0.73 | 0.688357 |
Target: 5'- --cGGACCaguuccacCUGGACCAGGaGGACCa -3' miRNA: 3'- ccuCCUGGac------GACCUGGUCUaCCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 23911 | 0.73 | 0.659134 |
Target: 5'- -uAGGACCUGCUGGACCuGuu-GAUCc -3' miRNA: 3'- ccUCCUGGACGACCUGGuCuacCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 28267 | 0.74 | 0.619924 |
Target: 5'- --uGGACCaGUUGGACCuGGaGGACCa -3' miRNA: 3'- ccuCCUGGaCGACCUGGuCUaCCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 23731 | 0.74 | 0.600342 |
Target: 5'- aGGAGGACCUGCUGGACCn-------- -3' miRNA: 3'- -CCUCCUGGACGACCUGGucuaccugg -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 21327 | 0.75 | 0.580846 |
Target: 5'- -aAGGAaCUGCUGGACUAGuaauUGGAUCg -3' miRNA: 3'- ccUCCUgGACGACCUGGUCu---ACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 28232 | 0.75 | 0.571146 |
Target: 5'- -uAGGACCaGCaGGACCAGucGGACCa -3' miRNA: 3'- ccUCCUGGaCGaCCUGGUCuaCCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 28460 | 0.72 | 0.726684 |
Target: 5'- -uAGGACCUGgaGGuCCuGGaGGACCa -3' miRNA: 3'- ccUCCUGGACgaCCuGGuCUaCCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 28408 | 0.72 | 0.745429 |
Target: 5'- uGGAGGACCUGgaGGACCAcuucccCCa -3' miRNA: 3'- -CCUCCUGGACgaCCUGGUcuaccuGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 222945 | 0.71 | 0.799221 |
Target: 5'- -cAGGACCaGCaGGACCAGGagaaccaguaGGACCa -3' miRNA: 3'- ccUCCUGGaCGaCCUGGUCUa---------CCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 5424 | 0.69 | 0.855579 |
Target: 5'- uGAuGGACCUGCcgcacGAUUAGGUGGAUCu -3' miRNA: 3'- cCU-CCUGGACGac---CUGGUCUACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 28178 | 0.68 | 0.896764 |
Target: 5'- -cAGcACCaGCaGGACCAGuUGGACCa -3' miRNA: 3'- ccUCcUGGaCGaCCUGGUCuACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 223035 | 0.68 | 0.914552 |
Target: 5'- -aAGGACCaGUaGGACCAGGauuuccaacaGGACCa -3' miRNA: 3'- ccUCCUGGaCGaCCUGGUCUa---------CCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 23274 | 0.67 | 0.943805 |
Target: 5'- uGAGGACCaggagcaccaucaUcaccaGCaGGACCAGuUGGACCn -3' miRNA: 3'- cCUCCUGG-------------A-----CGaCCUGGUCuACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 222993 | 0.67 | 0.94842 |
Target: 5'- -cAGGcgaACCaGCaGGACCAGGugaaccuugUGGACCa -3' miRNA: 3'- ccUCC---UGGaCGaCCUGGUCU---------ACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 23713 | 1.13 | 0.002596 |
Target: 5'- uGGAGGACCUGCUGGACCAGAUGGACCu -3' miRNA: 3'- -CCUCCUGGACGACCUGGUCUACCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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