miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31661 5' -56.4 NC_006883.1 + 248293 0.73 0.678649
Target:  5'- -aAGGAUgUGCUGGACUgAGAUcauuaGGACCa -3'
miRNA:   3'- ccUCCUGgACGACCUGG-UCUA-----CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 223067 0.87 0.122732
Target:  5'- aGGAGGACCUGgaGGACCAacaGGACCa -3'
miRNA:   3'- -CCUCCUGGACgaCCUGGUcuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 223035 0.68 0.914552
Target:  5'- -aAGGACCaGUaGGACCAGGauuuccaacaGGACCa -3'
miRNA:   3'- ccUCCUGGaCGaCCUGGUCUa---------CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 222993 0.67 0.94842
Target:  5'- -cAGGcgaACCaGCaGGACCAGGugaaccuugUGGACCa -3'
miRNA:   3'- ccUCC---UGGaCGaCCUGGUCU---------ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 222945 0.71 0.799221
Target:  5'- -cAGGACCaGCaGGACCAGGagaaccaguaGGACCa -3'
miRNA:   3'- ccUCCUGGaCGaCCUGGUCUa---------CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 222677 0.66 0.963054
Target:  5'- --uGGuCCUGCUGGuCCugcuGGUGGaACUg -3'
miRNA:   3'- ccuCCuGGACGACCuGGu---CUACC-UGG- -5'
31661 5' -56.4 NC_006883.1 + 211383 0.7 0.816125
Target:  5'- -aAGGACCUcaucCUGGACCAGGuUGGAa- -3'
miRNA:   3'- ccUCCUGGAc---GACCUGGUCU-ACCUgg -5'
31661 5' -56.4 NC_006883.1 + 203475 0.66 0.963054
Target:  5'- gGGAGGAUCaa--GGACCAGaAUGGuCUg -3'
miRNA:   3'- -CCUCCUGGacgaCCUGGUC-UACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 192092 0.69 0.870103
Target:  5'- ---uGGCCUGCUGGugUAGGUGGu-- -3'
miRNA:   3'- ccucCUGGACGACCugGUCUACCugg -5'
31661 5' -56.4 NC_006883.1 + 112317 0.72 0.707638
Target:  5'- uGGuGGAUCUGgUGGugCuacuGGUGGAUCu -3'
miRNA:   3'- -CCuCCUGGACgACCugGu---CUACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 39888 0.68 0.920047
Target:  5'- uGGuaauGGugCUGCUGGugUuccUGGAUCa -3'
miRNA:   3'- -CCu---CCugGACGACCugGucuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 37465 0.66 0.956151
Target:  5'- uGGuGGAUCUGCUGGuAUUAauacUGGAUCa -3'
miRNA:   3'- -CCuCCUGGACGACC-UGGUcu--ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28565 0.66 0.952391
Target:  5'- -aAGuuCCUGgUGGACCuGGaGGACCa -3'
miRNA:   3'- ccUCcuGGACgACCUGGuCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28529 0.92 0.058641
Target:  5'- -aAGGACCUGUUGGACCAGuUGGACCa -3'
miRNA:   3'- ccUCCUGGACGACCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28501 0.73 0.688357
Target:  5'- --cGGACCaguuccacCUGGACCAGGaGGACCa -3'
miRNA:   3'- ccuCCUGGac------GACCUGGUCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28460 0.72 0.726684
Target:  5'- -uAGGACCUGgaGGuCCuGGaGGACCa -3'
miRNA:   3'- ccUCCUGGACgaCCuGGuCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28408 0.72 0.745429
Target:  5'- uGGAGGACCUGgaGGACCAcuucccCCa -3'
miRNA:   3'- -CCUCCUGGACgaCCUGGUcuaccuGG- -5'
31661 5' -56.4 NC_006883.1 + 28363 0.85 0.177443
Target:  5'- aGGAGGuCCUGgaGGACCAGcaGGACCa -3'
miRNA:   3'- -CCUCCuGGACgaCCUGGUCuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28321 0.83 0.209267
Target:  5'- uGGAGGACCUGgaGGACCaucaucaccaguaGGAccaguUGGACCa -3'
miRNA:   3'- -CCUCCUGGACgaCCUGG-------------UCU-----ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28267 0.74 0.619924
Target:  5'- --uGGACCaGUUGGACCuGGaGGACCa -3'
miRNA:   3'- ccuCCUGGaCGACCUGGuCUaCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.