miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31662 3' -50.9 NC_006883.1 + 23958 1.15 0.006833
Target:  5'- uCCAAUACCAGCAGAACCAGUCGGACCa -3'
miRNA:   3'- -GGUUAUGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28237 1.06 0.024103
Target:  5'- aCCAGUaggACCAGCAGGACCAGUCGGACCa -3'
miRNA:   3'- -GGUUA---UGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 21949 1 0.054303
Target:  5'- uCCAGUACCAGgAGGACCAGUUGGACCu -3'
miRNA:   3'- -GGUUAUGGUCgUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 22020 0.99 0.070934
Target:  5'- cCCGuaggACCAGCAGGACCAGUUGGACCa -3'
miRNA:   3'- -GGUua--UGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28180 0.98 0.072845
Target:  5'- gUCAGcACCAGCAGGACCAGUUGGACCa -3'
miRNA:   3'- -GGUUaUGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 26803 0.98 0.080992
Target:  5'- aCCAGUuggaccugguggACCAGCAGGACCAGUUGGACCu -3'
miRNA:   3'- -GGUUA------------UGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 26641 0.98 0.080992
Target:  5'- aCCAGUuccaccugugggACCAGCAGGACCAGUUGGACCu -3'
miRNA:   3'- -GGUUA------------UGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23167 0.97 0.090006
Target:  5'- uCCAGUuaaaccuggagcACCAGCAGGACCAGUUGGACCu -3'
miRNA:   3'- -GGUUA------------UGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23260 0.96 0.097384
Target:  5'- aCCAucaucACCAGCAGGACCAGUUGGACCu -3'
miRNA:   3'- -GGUua---UGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 22058 0.94 0.129593
Target:  5'- ----cACCAGCAGGACCAGUUGGACCu -3'
miRNA:   3'- gguuaUGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28306 0.93 0.143578
Target:  5'- aCCAucaucACCAGUAGGACCAGUUGGACCa -3'
miRNA:   3'- -GGUua---UGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 21743 0.9 0.209004
Target:  5'- uCCAGUuggaccuggaggACCAGCAGGACCAGUaGGACCa -3'
miRNA:   3'- -GGUUA------------UGGUCGUCUUGGUCAgCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 222959 0.89 0.241703
Target:  5'- aCCAGUuccACCAGCAGGACCAG-CaGGACCa -3'
miRNA:   3'- -GGUUA---UGGUCGUCUUGGUCaG-CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 27764 0.89 0.241703
Target:  5'- -----uCCAGCAGGACCAGUUGGACCu -3'
miRNA:   3'- gguuauGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28525 0.88 0.272115
Target:  5'- aCCuguuggACCAGUuGGACCAGUCGGACCa -3'
miRNA:   3'- -GGuua---UGGUCGuCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 223085 0.87 0.319747
Target:  5'- uCCAccACCAGCAGGACCAGgaGGACCu -3'
miRNA:   3'- -GGUuaUGGUCGUCUUGGUCagCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23341 0.87 0.32704
Target:  5'- aCCAGUuggaccuggagaACCAGCAGGaccuugaggACCAGUUGGACCa -3'
miRNA:   3'- -GGUUA------------UGGUCGUCU---------UGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 21868 0.84 0.423942
Target:  5'- aCCAGaggACCAGCAGGuCCAGUaGGACCa -3'
miRNA:   3'- -GGUUa--UGGUCGUCUuGGUCAgCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28366 0.84 0.447097
Target:  5'- aCCAGgagguccuggaggACCAGCAGGACCAGUuccgccUGGACCu -3'
miRNA:   3'- -GGUUa------------UGGUCGUCUUGGUCA------GCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 22252 0.84 0.450721
Target:  5'- aCCAGcagauCCAGCAGGACCAGgaGGACCa -3'
miRNA:   3'- -GGUUau---GGUCGUCUUGGUCagCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.