miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31662 3' -50.9 NC_006883.1 + 16182 0.66 0.999377
Target:  5'- -uGGUGCUGGUGGGACUGGUaaacuUGGACUg -3'
miRNA:   3'- ggUUAUGGUCGUCUUGGUCA-----GCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 21743 0.9 0.209004
Target:  5'- uCCAGUuggaccuggaggACCAGCAGGACCAGUaGGACCa -3'
miRNA:   3'- -GGUUA------------UGGUCGUCUUGGUCAgCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 21771 0.69 0.991316
Target:  5'- ----gACCuGgAGGACCAGaaGGACCa -3'
miRNA:   3'- gguuaUGGuCgUCUUGGUCagCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 21815 0.8 0.616257
Target:  5'- aCCuugaggGCCAGCAGGACCAGgaccgccaccUGGACCa -3'
miRNA:   3'- -GGuua---UGGUCGUCUUGGUCa---------GCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 21868 0.84 0.423942
Target:  5'- aCCAGaggACCAGCAGGuCCAGUaGGACCa -3'
miRNA:   3'- -GGUUa--UGGUCGUCUuGGUCAgCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 21917 0.68 0.994235
Target:  5'- ----gACCAGCAucACCuugCGGACCu -3'
miRNA:   3'- gguuaUGGUCGUcuUGGucaGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 21949 1 0.054303
Target:  5'- uCCAGUACCAGgAGGACCAGUUGGACCu -3'
miRNA:   3'- -GGUUAUGGUCgUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 21985 0.67 0.996841
Target:  5'- uCCAcuuggACCAGgAGGACCuG-CaGGACCa -3'
miRNA:   3'- -GGUua---UGGUCgUCUUGGuCaG-CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 22020 0.99 0.070934
Target:  5'- cCCGuaggACCAGCAGGACCAGUUGGACCa -3'
miRNA:   3'- -GGUua--UGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 22058 0.94 0.129593
Target:  5'- ----cACCAGCAGGACCAGUUGGACCu -3'
miRNA:   3'- gguuaUGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 22132 0.79 0.656839
Target:  5'- aCCAcuuggACCAGCAGGACCAucuccaccacUCGGACCu -3'
miRNA:   3'- -GGUua---UGGUCGUCUUGGUc---------AGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 22207 0.79 0.67503
Target:  5'- aCCuggaggACCAGCAGGACCAGgaccaccacuaGGACCu -3'
miRNA:   3'- -GGuua---UGGUCGUCUUGGUCag---------CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 22252 0.84 0.450721
Target:  5'- aCCAGcagauCCAGCAGGACCAGgaGGACCa -3'
miRNA:   3'- -GGUUau---GGUCGUCUUGGUCagCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 22755 0.66 0.999238
Target:  5'- gCAcUAUCAGCAGAACCacuaacauuagcAGUUGcACCc -3'
miRNA:   3'- gGUuAUGGUCGUCUUGG------------UCAGCcUGG- -5'
31662 3' -50.9 NC_006883.1 + 23167 0.97 0.090006
Target:  5'- uCCAGUuaaaccuggagcACCAGCAGGACCAGUUGGACCu -3'
miRNA:   3'- -GGUUA------------UGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23222 0.83 0.469081
Target:  5'- ----cACCAGCAGGACCAGgaGGACCa -3'
miRNA:   3'- gguuaUGGUCGUCUUGGUCagCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23260 0.96 0.097384
Target:  5'- aCCAucaucACCAGCAGGACCAGUUGGACCu -3'
miRNA:   3'- -GGUua---UGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23293 0.71 0.975338
Target:  5'- aCCGAUACCuGgAGGACCuuGa-GGACCa -3'
miRNA:   3'- -GGUUAUGGuCgUCUUGGu-CagCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23341 0.87 0.32704
Target:  5'- aCCAGUuggaccuggagaACCAGCAGGaccuugaggACCAGUUGGACCa -3'
miRNA:   3'- -GGUUA------------UGGUCGUCU---------UGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23401 0.83 0.497315
Target:  5'- uCCAGUuggaccugugggACCuGUGGGACCAGUUGGACCu -3'
miRNA:   3'- -GGUUA------------UGGuCGUCUUGGUCAGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.