miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31662 3' -50.9 NC_006883.1 + 23434 0.69 0.990118
Target:  5'- aCCuggACCuGguGGACCuGUaGGACCa -3'
miRNA:   3'- -GGuuaUGGuCguCUUGGuCAgCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23689 0.72 0.960257
Target:  5'- aCCuggaggACCAGCAGGACCAGguccACCa -3'
miRNA:   3'- -GGuua---UGGUCGUCUUGGUCagccUGG- -5'
31662 3' -50.9 NC_006883.1 + 23740 0.71 0.969914
Target:  5'- aCCAGauCCAGgAGGACCuGcUGGACCu -3'
miRNA:   3'- -GGUUauGGUCgUCUUGGuCaGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23925 0.73 0.929967
Target:  5'- aCCAGUuggACCuGUAGGACCuGcUGGACCu -3'
miRNA:   3'- -GGUUA---UGGuCGUCUUGGuCaGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23958 1.15 0.006833
Target:  5'- uCCAAUACCAGCAGAACCAGUCGGACCa -3'
miRNA:   3'- -GGUUAUGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 25002 0.67 0.998387
Target:  5'- aCCuggaggACCGcUAGGACCAcUUGGACCa -3'
miRNA:   3'- -GGuua---UGGUcGUCUUGGUcAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 25386 0.71 0.975338
Target:  5'- uUCAGUAUCAGCAGcaguaauucuauAAUUcugAGUUGGACCg -3'
miRNA:   3'- -GGUUAUGGUCGUC------------UUGG---UCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 26560 0.7 0.98399
Target:  5'- uCCAGgaggACCuGCuGGACCuGUaGGACCu -3'
miRNA:   3'- -GGUUa---UGGuCGuCUUGGuCAgCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 26641 0.98 0.080992
Target:  5'- aCCAGUuccaccugugggACCAGCAGGACCAGUUGGACCu -3'
miRNA:   3'- -GGUUA------------UGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 26674 0.68 0.995697
Target:  5'- aCCuggACCuGgAGGACC-GUCuGGACCa -3'
miRNA:   3'- -GGuuaUGGuCgUCUUGGuCAG-CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 26758 0.69 0.992084
Target:  5'- aCCAGUugcACCAGCAGGACCAuuacuuccaucuGcUCcaucauuuccaggaGGACCu -3'
miRNA:   3'- -GGUUA---UGGUCGUCUUGGU------------C-AG--------------CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 26803 0.98 0.080992
Target:  5'- aCCAGUuggaccugguggACCAGCAGGACCAGUUGGACCu -3'
miRNA:   3'- -GGUUA------------UGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 26988 0.72 0.944327
Target:  5'- aCCAGgaggACCuGgAGAACCAG-CaGGACCu -3'
miRNA:   3'- -GGUUa---UGGuCgUCUUGGUCaG-CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 27494 0.74 0.913494
Target:  5'- aCCugcuggACCuGUAGGACCAGgagcaccuugCGGACCa -3'
miRNA:   3'- -GGuua---UGGuCGUCUUGGUCa---------GCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 27530 0.68 0.995697
Target:  5'- aCCAucuccACCuGUAGGACCuGaUGGACCu -3'
miRNA:   3'- -GGUua---UGGuCGUCUUGGuCaGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 27593 0.67 0.997722
Target:  5'- uCCAGgaggACCuGgAGGACCuGcUGGACCu -3'
miRNA:   3'- -GGUUa---UGGuCgUCUUGGuCaGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 27665 0.67 0.997722
Target:  5'- uCCAGgaggACCuGgAGGACCuGcUGGACCu -3'
miRNA:   3'- -GGUUa---UGGuCgUCUUGGuCaGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 27737 0.83 0.497315
Target:  5'- aCCAGUugguCCuGUGGGACCuGUCGGACCa -3'
miRNA:   3'- -GGUUAu---GGuCGUCUUGGuCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 27764 0.89 0.241703
Target:  5'- -----uCCAGCAGGACCAGUUGGACCu -3'
miRNA:   3'- gguuauGGUCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28066 0.7 0.983435
Target:  5'- uCCAGguCCAgGCGGAACUGGUCcugcugguccuccaGGACCu -3'
miRNA:   3'- -GGUUauGGU-CGUCUUGGUCAG--------------CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.