miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31662 3' -50.9 NC_006883.1 + 232518 0.77 0.801696
Target:  5'- aCCcuUACCAGUAGGACCuGUCuGACUc -3'
miRNA:   3'- -GGuuAUGGUCGUCUUGGuCAGcCUGG- -5'
31662 3' -50.9 NC_006883.1 + 230529 0.72 0.95661
Target:  5'- gUAAU-CUAGCAGAACCAGU-GGugUa -3'
miRNA:   3'- gGUUAuGGUCGUCUUGGUCAgCCugG- -5'
31662 3' -50.9 NC_006883.1 + 223085 0.87 0.319747
Target:  5'- uCCAccACCAGCAGGACCAGgaGGACCu -3'
miRNA:   3'- -GGUuaUGGUCGUCUUGGUCagCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 223040 0.8 0.634525
Target:  5'- aCCAGaaggACCAGUAGGACCAGgauuuccaacaGGACCa -3'
miRNA:   3'- -GGUUa---UGGUCGUCUUGGUCag---------CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 222995 0.77 0.801696
Target:  5'- aCCAGgcgaACCAGCAGGACCAGgUGaACCu -3'
miRNA:   3'- -GGUUa---UGGUCGUCUUGGUCaGCcUGG- -5'
31662 3' -50.9 NC_006883.1 + 222959 0.89 0.241703
Target:  5'- aCCAGUuccACCAGCAGGACCAG-CaGGACCa -3'
miRNA:   3'- -GGUUA---UGGUCGUCUUGGUCaG-CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 222923 0.81 0.555869
Target:  5'- aCCAGUaggACCAGCAGGACCAGUaGuACCa -3'
miRNA:   3'- -GGUUA---UGGUCGUCUUGGUCAgCcUGG- -5'
31662 3' -50.9 NC_006883.1 + 221773 0.7 0.982084
Target:  5'- gCAGUAgCAGCAuuACCAGUCaaaGGuCCa -3'
miRNA:   3'- gGUUAUgGUCGUcuUGGUCAG---CCuGG- -5'
31662 3' -50.9 NC_006883.1 + 212208 0.67 0.998078
Target:  5'- -gGAUACUcaaucaGGUGGAACCAGUUGGuCa -3'
miRNA:   3'- ggUUAUGG------UCGUCUUGGUCAGCCuGg -5'
31662 3' -50.9 NC_006883.1 + 209984 0.71 0.966903
Target:  5'- uCCAAUACCAGCAGGAUUuucuaGGUa-GACUu -3'
miRNA:   3'- -GGUUAUGGUCGUCUUGG-----UCAgcCUGG- -5'
31662 3' -50.9 NC_006883.1 + 112593 0.7 0.985739
Target:  5'- aCCAGUagcACCAcCAGAuccACCAGUaccaccaucagcUGGACCg -3'
miRNA:   3'- -GGUUA---UGGUcGUCU---UGGUCA------------GCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 106679 0.68 0.993366
Target:  5'- -aAGUugCAGCAGcACCAGUUccACCa -3'
miRNA:   3'- ggUUAugGUCGUCuUGGUCAGccUGG- -5'
31662 3' -50.9 NC_006883.1 + 79969 0.66 0.99888
Target:  5'- uUCAG-AUUAGCAGAugCAGguaUCGGAaCCc -3'
miRNA:   3'- -GGUUaUGGUCGUCUugGUC---AGCCU-GG- -5'
31662 3' -50.9 NC_006883.1 + 41754 0.71 0.969914
Target:  5'- aCAGUACCuuCAGAACCAagaGGACUa -3'
miRNA:   3'- gGUUAUGGucGUCUUGGUcagCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 41673 0.67 0.997267
Target:  5'- gCAAcACCAGCAGGGuuuuccuuCCAGUUuauuugaGGACUa -3'
miRNA:   3'- gGUUaUGGUCGUCUU--------GGUCAG-------CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28525 0.88 0.272115
Target:  5'- aCCuguuggACCAGUuGGACCAGUCGGACCa -3'
miRNA:   3'- -GGuua---UGGUCGuCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28474 0.74 0.913494
Target:  5'- aCCAucuccACCAGUAGGACCuggaGGUCcuggaGGACCa -3'
miRNA:   3'- -GGUua---UGGUCGUCUUGG----UCAG-----CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28426 0.67 0.998387
Target:  5'- aUCAGaACCAuCAGAACCuggaGGACCu -3'
miRNA:   3'- -GGUUaUGGUcGUCUUGGucagCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28366 0.84 0.447097
Target:  5'- aCCAGgagguccuggaggACCAGCAGGACCAGUuccgccUGGACCu -3'
miRNA:   3'- -GGUUa------------UGGUCGUCUUGGUCA------GCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28306 0.93 0.143578
Target:  5'- aCCAucaucACCAGUAGGACCAGUUGGACCa -3'
miRNA:   3'- -GGUua---UGGUCGUCUUGGUCAGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.