miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31662 3' -50.9 NC_006883.1 + 221773 0.7 0.982084
Target:  5'- gCAGUAgCAGCAuuACCAGUCaaaGGuCCa -3'
miRNA:   3'- gGUUAUgGUCGUcuUGGUCAG---CCuGG- -5'
31662 3' -50.9 NC_006883.1 + 23293 0.71 0.975338
Target:  5'- aCCGAUACCuGgAGGACCuuGa-GGACCa -3'
miRNA:   3'- -GGUUAUGGuCgUCUUGGu-CagCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 25386 0.71 0.975338
Target:  5'- uUCAGUAUCAGCAGcaguaauucuauAAUUcugAGUUGGACCg -3'
miRNA:   3'- -GGUUAUGGUCGUC------------UUGG---UCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 41754 0.71 0.969914
Target:  5'- aCAGUACCuuCAGAACCAagaGGACUa -3'
miRNA:   3'- gGUUAUGGucGUCUUGGUcagCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23740 0.71 0.969914
Target:  5'- aCCAGauCCAGgAGGACCuGcUGGACCu -3'
miRNA:   3'- -GGUUauGGUCgUCUUGGuCaGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 209984 0.71 0.966903
Target:  5'- uCCAAUACCAGCAGGAUUuucuaGGUa-GACUu -3'
miRNA:   3'- -GGUUAUGGUCGUCUUGG-----UCAgcCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23689 0.72 0.960257
Target:  5'- aCCuggaggACCAGCAGGACCAGguccACCa -3'
miRNA:   3'- -GGuua---UGGUCGUCUUGGUCagccUGG- -5'
31662 3' -50.9 NC_006883.1 + 230529 0.72 0.95661
Target:  5'- gUAAU-CUAGCAGAACCAGU-GGugUa -3'
miRNA:   3'- gGUUAuGGUCGUCUUGGUCAgCCugG- -5'
31662 3' -50.9 NC_006883.1 + 26988 0.72 0.944327
Target:  5'- aCCAGgaggACCuGgAGAACCAG-CaGGACCu -3'
miRNA:   3'- -GGUUa---UGGuCgUCUUGGUCaG-CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23925 0.73 0.929967
Target:  5'- aCCAGUuggACCuGUAGGACCuGcUGGACCu -3'
miRNA:   3'- -GGUUA---UGGuCGUCUUGGuCaGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28474 0.74 0.913494
Target:  5'- aCCAucuccACCAGUAGGACCuggaGGUCcuggaGGACCa -3'
miRNA:   3'- -GGUua---UGGUCGUCUUGG----UCAG-----CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 27494 0.74 0.913494
Target:  5'- aCCugcuggACCuGUAGGACCAGgagcaccuugCGGACCa -3'
miRNA:   3'- -GGuua---UGGuCGUCUUGGUCa---------GCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28278 0.74 0.894925
Target:  5'- nCAGUuCCGcCuGGACCAGUUGGACCu -3'
miRNA:   3'- gGUUAuGGUcGuCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 222995 0.77 0.801696
Target:  5'- aCCAGgcgaACCAGCAGGACCAGgUGaACCu -3'
miRNA:   3'- -GGUUa---UGGUCGUCUUGGUCaGCcUGG- -5'
31662 3' -50.9 NC_006883.1 + 232518 0.77 0.801696
Target:  5'- aCCcuUACCAGUAGGACCuGUCuGACUc -3'
miRNA:   3'- -GGuuAUGGUCGUCUUGGuCAGcCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28114 0.79 0.677046
Target:  5'- -aGGU-CCuGUAGGACCAGUUGGACCu -3'
miRNA:   3'- ggUUAuGGuCGUCUUGGUCAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 22207 0.79 0.67503
Target:  5'- aCCuggaggACCAGCAGGACCAGgaccaccacuaGGACCu -3'
miRNA:   3'- -GGuua---UGGUCGUCUUGGUCag---------CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 22132 0.79 0.656839
Target:  5'- aCCAcuuggACCAGCAGGACCAucuccaccacUCGGACCu -3'
miRNA:   3'- -GGUua---UGGUCGUCUUGGUc---------AGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 223040 0.8 0.634525
Target:  5'- aCCAGaaggACCAGUAGGACCAGgauuuccaacaGGACCa -3'
miRNA:   3'- -GGUUa---UGGUCGUCUUGGUCag---------CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 21815 0.8 0.616257
Target:  5'- aCCuugaggGCCAGCAGGACCAGgaccgccaccUGGACCa -3'
miRNA:   3'- -GGuua---UGGUCGUCUUGGUCa---------GCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.