miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31662 5' -55.3 NC_006883.1 + 23911 1.05 0.007695
Target:  5'- uAGGACCUGCUGGACCUGUUGAUCCAAc -3'
miRNA:   3'- -UCCUGGACGACCUGGACAACUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 27498 0.88 0.103295
Target:  5'- uAGGACCUGCUGGACCUGUaGGaCCAGg -3'
miRNA:   3'- -UCCUGGACGACCUGGACAaCUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 22913 0.88 0.111687
Target:  5'- uGGACCUGCUGGuCCUGaUGGUCCAAg -3'
miRNA:   3'- uCCUGGACGACCuGGACaACUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 27579 0.86 0.133806
Target:  5'- gAGGACCUGCUGGACCUGUg---CCAc -3'
miRNA:   3'- -UCCUGGACGACCUGGACAacuaGGUu -5'
31662 5' -55.3 NC_006883.1 + 26555 0.84 0.172426
Target:  5'- gAGGACCUGCUGGACCUGUaggaccugcUGGaCCAu -3'
miRNA:   3'- -UCCUGGACGACCUGGACA---------ACUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 23431 0.84 0.195259
Target:  5'- uGGACCUGgUGGACCUGUaggaccaucUGGUCCAGu -3'
miRNA:   3'- uCCUGGACgACCUGGACA---------ACUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 26708 0.84 0.195259
Target:  5'- gAGGACCUGCUGGACCUGgaGuaccaguUCCAc -3'
miRNA:   3'- -UCCUGGACGACCUGGACaaCu------AGGUu -5'
31662 5' -55.3 NC_006883.1 + 27651 0.84 0.195259
Target:  5'- gAGGACCUGCUGGACCUGgaGuaccaguUCCAc -3'
miRNA:   3'- -UCCUGGACGACCUGGACaaCu------AGGUu -5'
31662 5' -55.3 NC_006883.1 + 23729 0.83 0.20511
Target:  5'- gAGGACCUGCUGGACCUGgagGA-CCu- -3'
miRNA:   3'- -UCCUGGACGACCUGGACaa-CUaGGuu -5'
31662 5' -55.3 NC_006883.1 + 21938 0.83 0.220691
Target:  5'- gAGGACCaGUUGGACCUGUUGGaCCAGc -3'
miRNA:   3'- -UCCUGGaCGACCUGGACAACUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 28529 0.83 0.220691
Target:  5'- aAGGACCUGUUGGACCaGUUGGaCCAGu -3'
miRNA:   3'- -UCCUGGACGACCUGGaCAACUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 21971 0.8 0.300124
Target:  5'- gAGGACCUGCaGGACCaGgaGAUCCAGu -3'
miRNA:   3'- -UCCUGGACGaCCUGGaCaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 27749 0.79 0.367054
Target:  5'- uGGACCUGUgGGACCaGUUGGUCCu- -3'
miRNA:   3'- uCCUGGACGaCCUGGaCAACUAGGuu -5'
31662 5' -55.3 NC_006883.1 + 28132 0.78 0.391534
Target:  5'- uGGACCaGUUGGACCUGUaGGUCCu- -3'
miRNA:   3'- uCCUGGaCGACCUGGACAaCUAGGuu -5'
31662 5' -55.3 NC_006883.1 + 26618 0.78 0.417054
Target:  5'- cAGGACCaGUUGGACCUGUUGcaCCAu -3'
miRNA:   3'- -UCCUGGaCGACCUGGACAACuaGGUu -5'
31662 5' -55.3 NC_006883.1 + 21596 0.77 0.452608
Target:  5'- uGGACCUGCUGGuCCUccUGGUCCu- -3'
miRNA:   3'- uCCUGGACGACCuGGAcaACUAGGuu -5'
31662 5' -55.3 NC_006883.1 + 23345 0.76 0.518519
Target:  5'- cAGGACCaGUUGGACCUGgaGAaCCAGc -3'
miRNA:   3'- -UCCUGGaCGACCUGGACaaCUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 27723 0.75 0.547931
Target:  5'- uGGGACCUGUcGGACCaGUaggaccUGAUCCAc -3'
miRNA:   3'- -UCCUGGACGaCCUGGaCA------ACUAGGUu -5'
31662 5' -55.3 NC_006883.1 + 23395 0.75 0.547931
Target:  5'- uGGACCUGUgGGACCUGUggGA-CCAGu -3'
miRNA:   3'- uCCUGGACGaCCUGGACAa-CUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 28327 0.75 0.557855
Target:  5'- uGGACCUGgaGGACCUGgagGA-CCAu -3'
miRNA:   3'- uCCUGGACgaCCUGGACaa-CUaGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.