miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31662 5' -55.3 NC_006883.1 + 21461 0.69 0.875582
Target:  5'- uGGuCCUGCUGGuCCUccaGGUCCAAc -3'
miRNA:   3'- uCCuGGACGACCuGGAcaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 21542 0.74 0.618237
Target:  5'- uGGuCCUGCUGGcCCucaaggugaUGUUGGUCCGAg -3'
miRNA:   3'- uCCuGGACGACCuGG---------ACAACUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 21596 0.77 0.452608
Target:  5'- uGGACCUGCUGGuCCUccUGGUCCu- -3'
miRNA:   3'- uCCUGGACGACCuGGAcaACUAGGuu -5'
31662 5' -55.3 NC_006883.1 + 21704 0.66 0.967404
Target:  5'- uGGuCCUGCaGGuCCUccUGGUCCAAg -3'
miRNA:   3'- uCCuGGACGaCCuGGAcaACUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 21749 0.71 0.785367
Target:  5'- uGGuCCUGCUGGuCCUacgGGUCCAGa -3'
miRNA:   3'- uCCuGGACGACCuGGAcaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 21774 0.67 0.920168
Target:  5'- aAGGACCUGgaGGACCaGaagGA-CCAGu -3'
miRNA:   3'- -UCCUGGACgaCCUGGaCaa-CUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 21901 0.67 0.925616
Target:  5'- cGGACCuUGC-GGACCUGgagGA-CCAc -3'
miRNA:   3'- uCCUGG-ACGaCCUGGACaa-CUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 21935 0.69 0.868326
Target:  5'- uGGuCCUGCUGGuCCUccagGUcagaUGGUCCAAg -3'
miRNA:   3'- uCCuGGACGACCuGGA----CA----ACUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 21938 0.83 0.220691
Target:  5'- gAGGACCaGUUGGACCUGUUGGaCCAGc -3'
miRNA:   3'- -UCCUGGaCGACCUGGACAACUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 21971 0.8 0.300124
Target:  5'- gAGGACCUGCaGGACCaGgaGAUCCAGu -3'
miRNA:   3'- -UCCUGGACGaCCUGGaCaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 21979 0.73 0.638522
Target:  5'- uGGuCCUGCUGGAUCUGcUGGUgCGAu -3'
miRNA:   3'- uCCuGGACGACCUGGACaACUAgGUU- -5'
31662 5' -55.3 NC_006883.1 + 22016 0.71 0.794405
Target:  5'- uAGGACCaGCaGGACCaGUUGGaCCAGg -3'
miRNA:   3'- -UCCUGGaCGaCCUGGaCAACUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 22052 0.73 0.64866
Target:  5'- cAGGACCaGUUGGACCUGUaGGaCCGu -3'
miRNA:   3'- -UCCUGGaCGACCUGGACAaCUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 22099 0.69 0.860861
Target:  5'- cGGACCUGgaGGACCacUUGGaCCAGg -3'
miRNA:   3'- uCCUGGACgaCCUGGacAACUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 22154 0.71 0.776193
Target:  5'- uAGGACCUGgaGGACCaGgUGAaCCAc -3'
miRNA:   3'- -UCCUGGACgaCCUGGaCaACUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 22219 0.67 0.930828
Target:  5'- uGGACCauCUGGACCUGgaGGaCCAGc -3'
miRNA:   3'- uCCUGGacGACCUGGACaaCUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 22913 0.88 0.111687
Target:  5'- uGGACCUGCUGGuCCUGaUGGUCCAAg -3'
miRNA:   3'- uCCUGGACGACCuGGACaACUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 22957 0.66 0.960831
Target:  5'- uGGuCCUGCUGGugguCCUccaGGUCCAAc -3'
miRNA:   3'- uCCuGGACGACCu---GGAcaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 23058 0.66 0.953394
Target:  5'- aAGGuCCUGCUGGuuCUccaGGUCCAAc -3'
miRNA:   3'- -UCCuGGACGACCugGAcaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 23144 0.71 0.776193
Target:  5'- cAGGACCaGUUGGACCUGgagcaccugGAUCgGGa -3'
miRNA:   3'- -UCCUGGaCGACCUGGACaa-------CUAGgUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.