miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31662 5' -55.3 NC_006883.1 + 23246 0.73 0.64866
Target:  5'- cAGGACCaGUUGGACCUGgagGA-CCAc -3'
miRNA:   3'- -UCCUGGaCGACCUGGACaa-CUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 23345 0.76 0.518519
Target:  5'- cAGGACCaGUUGGACCUGgaGAaCCAGc -3'
miRNA:   3'- -UCCUGGaCGACCUGGACaaCUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 23395 0.75 0.547931
Target:  5'- uGGACCUGUgGGACCUGUggGA-CCAGu -3'
miRNA:   3'- uCCUGGACGaCCUGGACAa-CUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 23416 0.68 0.914487
Target:  5'- uGGuCCUGCUGGuCCUccaGGUCCAu -3'
miRNA:   3'- uCCuGGACGACCuGGAcaaCUAGGUu -5'
31662 5' -55.3 NC_006883.1 + 23431 0.84 0.195259
Target:  5'- uGGACCUGgUGGACCUGUaggaccaucUGGUCCAGu -3'
miRNA:   3'- uCCUGGACgACCUGGACA---------ACUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 23692 0.67 0.943284
Target:  5'- uGGACCUGgaGGACCagcaggaccaGGUCCAc -3'
miRNA:   3'- uCCUGGACgaCCUGGacaa------CUAGGUu -5'
31662 5' -55.3 NC_006883.1 + 23729 0.83 0.20511
Target:  5'- gAGGACCUGCUGGACCUGgagGA-CCu- -3'
miRNA:   3'- -UCCUGGACGACCUGGACaa-CUaGGuu -5'
31662 5' -55.3 NC_006883.1 + 23911 1.05 0.007695
Target:  5'- uAGGACCUGCUGGACCUGUUGAUCCAAc -3'
miRNA:   3'- -UCCUGGACGACCUGGACAACUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 23937 0.69 0.868326
Target:  5'- cGGACCaGUUGGACCaGUUGGaCCu- -3'
miRNA:   3'- uCCUGGaCGACCUGGaCAACUaGGuu -5'
31662 5' -55.3 NC_006883.1 + 24951 0.71 0.775269
Target:  5'- uGGACCUGUaGGACCUGgaggagcaagagaUUGAauuaUCCAAg -3'
miRNA:   3'- uCCUGGACGaCCUGGAC-------------AACU----AGGUU- -5'
31662 5' -55.3 NC_006883.1 + 25014 0.73 0.638522
Target:  5'- uGGACCUGgaGGACCUGgagGA-CCGc -3'
miRNA:   3'- uCCUGGACgaCCUGGACaa-CUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 26359 0.67 0.945061
Target:  5'- uGGuCCUGCUGGuCCcacagGUggaacUGGUCCAAc -3'
miRNA:   3'- uCCuGGACGACCuGGa----CA-----ACUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 26485 0.68 0.914487
Target:  5'- uGGuCCUGCUGGugcaacugguCCUGcaGGUCCAAc -3'
miRNA:   3'- uCCuGGACGACCu---------GGACaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 26521 0.66 0.964223
Target:  5'- uGGuCCUGCUGGuCCaccaGGUCCAAc -3'
miRNA:   3'- uCCuGGACGACCuGGacaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 26555 0.84 0.172426
Target:  5'- gAGGACCUGCUGGACCUGUaggaccugcUGGaCCAu -3'
miRNA:   3'- -UCCUGGACGACCUGGACA---------ACUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 26618 0.78 0.417054
Target:  5'- cAGGACCaGUUGGACCUGUUGcaCCAu -3'
miRNA:   3'- -UCCUGGaCGACCUGGACAACuaGGUu -5'
31662 5' -55.3 NC_006883.1 + 26663 0.7 0.812042
Target:  5'- gAGGACC-GuCUGGACCaGUUGGaCCAGu -3'
miRNA:   3'- -UCCUGGaC-GACCUGGaCAACUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 26708 0.84 0.195259
Target:  5'- gAGGACCUGCUGGACCUGgaGuaccaguUCCAc -3'
miRNA:   3'- -UCCUGGACGACCUGGACaaCu------AGGUu -5'
31662 5' -55.3 NC_006883.1 + 26780 0.72 0.708932
Target:  5'- cAGGACCaGUUGGACCUGcagGA-CCAGu -3'
miRNA:   3'- -UCCUGGaCGACCUGGACaa-CUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 26807 0.75 0.557855
Target:  5'- cAGGACCaGUUGGACCUGgUGGaCCAGc -3'
miRNA:   3'- -UCCUGGaCGACCUGGACaACUaGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.