miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31662 5' -55.3 NC_006883.1 + 223074 0.7 0.829037
Target:  5'- cAGGACCaGgaGGACCUGgagGA-CCAAc -3'
miRNA:   3'- -UCCUGGaCgaCCUGGACaa-CUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 222776 0.68 0.908572
Target:  5'- uGGuCCUuCUGGugguCCUGUUGGUCCu- -3'
miRNA:   3'- uCCuGGAcGACCu---GGACAACUAGGuu -5'
31662 5' -55.3 NC_006883.1 + 222722 0.69 0.882624
Target:  5'- uGGuCCUGCUGGuucGCCUGgugcaacUGGUCCu- -3'
miRNA:   3'- uCCuGGACGACC---UGGACa------ACUAGGuu -5'
31662 5' -55.3 NC_006883.1 + 222677 0.69 0.860861
Target:  5'- uGGuCCUGCUGGuCCUGcugguggaacUGGUCCAc -3'
miRNA:   3'- uCCuGGACGACCuGGACa---------ACUAGGUu -5'
31662 5' -55.3 NC_006883.1 + 28529 0.83 0.220691
Target:  5'- aAGGACCUGUUGGACCaGUUGGaCCAGu -3'
miRNA:   3'- -UCCUGGACGACCUGGaCAACUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 28460 0.69 0.868326
Target:  5'- uAGGACCUGgaGGuCCUGgagGA-CCAc -3'
miRNA:   3'- -UCCUGGACgaCCuGGACaa-CUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 28327 0.75 0.557855
Target:  5'- uGGACCUGgaGGACCUGgagGA-CCAu -3'
miRNA:   3'- uCCUGGACgaCCUGGACaa-CUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 28267 0.71 0.757475
Target:  5'- uGGACCaGUUGGACCUGgagGA-CCAu -3'
miRNA:   3'- uCCUGGaCGACCUGGACaa-CUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 28169 0.66 0.960831
Target:  5'- cAGGACCaGUUGGACCaGU---UCCAc -3'
miRNA:   3'- -UCCUGGaCGACCUGGaCAacuAGGUu -5'
31662 5' -55.3 NC_006883.1 + 28132 0.78 0.391534
Target:  5'- uGGACCaGUUGGACCUGUaGGUCCu- -3'
miRNA:   3'- uCCUGGaCGACCUGGACAaCUAGGuu -5'
31662 5' -55.3 NC_006883.1 + 28106 0.74 0.618237
Target:  5'- uAGGACCaGUUGGACCUGgaGGaCCAGc -3'
miRNA:   3'- -UCCUGGaCGACCUGGACaaCUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 27820 0.71 0.785367
Target:  5'- uAGGuCCUGCUGGuCCUccaGGUCCAAc -3'
miRNA:   3'- -UCCuGGACGACCuGGAcaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 27749 0.79 0.367054
Target:  5'- uGGACCUGUgGGACCaGUUGGUCCu- -3'
miRNA:   3'- uCCUGGACGaCCUGGaCAACUAGGuu -5'
31662 5' -55.3 NC_006883.1 + 27723 0.75 0.547931
Target:  5'- uGGGACCUGUcGGACCaGUaggaccUGAUCCAc -3'
miRNA:   3'- -UCCUGGACGaCCUGGaCA------ACUAGGUu -5'
31662 5' -55.3 NC_006883.1 + 27651 0.84 0.195259
Target:  5'- gAGGACCUGCUGGACCUGgaGuaccaguUCCAc -3'
miRNA:   3'- -UCCUGGACGACCUGGACaaCu------AGGUu -5'
31662 5' -55.3 NC_006883.1 + 27579 0.86 0.133806
Target:  5'- gAGGACCUGCUGGACCUGUg---CCAc -3'
miRNA:   3'- -UCCUGGACGACCUGGACAacuaGGUu -5'
31662 5' -55.3 NC_006883.1 + 27551 0.67 0.945061
Target:  5'- uGGACCacCUGGACCUGgagGA-CCAu -3'
miRNA:   3'- uCCUGGacGACCUGGACaa-CUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 27498 0.88 0.103295
Target:  5'- uAGGACCUGCUGGACCUGUaGGaCCAGg -3'
miRNA:   3'- -UCCUGGACGACCUGGACAaCUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 26807 0.75 0.557855
Target:  5'- cAGGACCaGUUGGACCUGgUGGaCCAGc -3'
miRNA:   3'- -UCCUGGaCGACCUGGACaACUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 26780 0.72 0.708932
Target:  5'- cAGGACCaGUUGGACCUGcagGA-CCAGu -3'
miRNA:   3'- -UCCUGGaCGACCUGGACaa-CUaGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.