miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31662 5' -55.3 NC_006883.1 + 222677 0.69 0.860861
Target:  5'- uGGuCCUGCUGGuCCUGcugguggaacUGGUCCAc -3'
miRNA:   3'- uCCuGGACGACCuGGACa---------ACUAGGUu -5'
31662 5' -55.3 NC_006883.1 + 223074 0.7 0.829037
Target:  5'- cAGGACCaGgaGGACCUGgagGA-CCAAc -3'
miRNA:   3'- -UCCUGGaCgaCCUGGACaa-CUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 26663 0.7 0.812042
Target:  5'- gAGGACC-GuCUGGACCaGUUGGaCCAGu -3'
miRNA:   3'- -UCCUGGaC-GACCUGGaCAACUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 22016 0.71 0.794405
Target:  5'- uAGGACCaGCaGGACCaGUUGGaCCAGg -3'
miRNA:   3'- -UCCUGGaCGaCCUGGaCAACUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 21749 0.71 0.785367
Target:  5'- uGGuCCUGCUGGuCCUacgGGUCCAGa -3'
miRNA:   3'- uCCuGGACGACCuGGAcaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 27820 0.71 0.785367
Target:  5'- uAGGuCCUGCUGGuCCUccaGGUCCAAc -3'
miRNA:   3'- -UCCuGGACGACCuGGAcaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 22154 0.71 0.776193
Target:  5'- uAGGACCUGgaGGACCaGgUGAaCCAc -3'
miRNA:   3'- -UCCUGGACgaCCUGGaCaACUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 23144 0.71 0.776193
Target:  5'- cAGGACCaGUUGGACCUGgagcaccugGAUCgGGa -3'
miRNA:   3'- -UCCUGGaCGACCUGGACaa-------CUAGgUU- -5'
31662 5' -55.3 NC_006883.1 + 24951 0.71 0.775269
Target:  5'- uGGACCUGUaGGACCUGgaggagcaagagaUUGAauuaUCCAAg -3'
miRNA:   3'- uCCUGGACGaCCUGGAC-------------AACU----AGGUU- -5'
31662 5' -55.3 NC_006883.1 + 28267 0.71 0.757475
Target:  5'- uGGACCaGUUGGACCUGgagGA-CCAu -3'
miRNA:   3'- uCCUGGaCGACCUGGACaa-CUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 26780 0.72 0.708932
Target:  5'- cAGGACCaGUUGGACCUGcagGA-CCAGu -3'
miRNA:   3'- -UCCUGGaCGACCUGGACaa-CUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 22052 0.73 0.64866
Target:  5'- cAGGACCaGUUGGACCUGUaGGaCCGu -3'
miRNA:   3'- -UCCUGGaCGACCUGGACAaCUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 23246 0.73 0.64866
Target:  5'- cAGGACCaGUUGGACCUGgagGA-CCAc -3'
miRNA:   3'- -UCCUGGaCGACCUGGACaa-CUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 21979 0.73 0.638522
Target:  5'- uGGuCCUGCUGGAUCUGcUGGUgCGAu -3'
miRNA:   3'- uCCuGGACGACCUGGACaACUAgGUU- -5'
31662 5' -55.3 NC_006883.1 + 25014 0.73 0.638522
Target:  5'- uGGACCUGgaGGACCUGgagGA-CCGc -3'
miRNA:   3'- uCCUGGACgaCCUGGACaa-CUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 21542 0.74 0.618237
Target:  5'- uGGuCCUGCUGGcCCucaaggugaUGUUGGUCCGAg -3'
miRNA:   3'- uCCuGGACGACCuGG---------ACAACUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 28106 0.74 0.618237
Target:  5'- uAGGACCaGUUGGACCUGgaGGaCCAGc -3'
miRNA:   3'- -UCCUGGaCGACCUGGACaaCUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 26807 0.75 0.557855
Target:  5'- cAGGACCaGUUGGACCUGgUGGaCCAGc -3'
miRNA:   3'- -UCCUGGaCGACCUGGACaACUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 28327 0.75 0.557855
Target:  5'- uGGACCUGgaGGACCUGgagGA-CCAu -3'
miRNA:   3'- uCCUGGACgaCCUGGACaa-CUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 23395 0.75 0.547931
Target:  5'- uGGACCUGUgGGACCUGUggGA-CCAGu -3'
miRNA:   3'- uCCUGGACGaCCUGGACAa-CUaGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.