Results 41 - 60 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31663 | 3' | -56 | NC_006883.1 | + | 222986 | 0.82 | 0.265819 |
Target: 5'- aCCAGCAGGACCAGgugaaccuugUGGACCaguuccaccaGCAGGn -3' miRNA: 3'- -GGUCGUCCUGGUCa---------ACCUGGa---------CGUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 27593 | 0.82 | 0.259792 |
Target: 5'- uCCAGgAGGACCuGgaGGACCUGCuGGa -3' miRNA: 3'- -GGUCgUCCUGGuCaaCCUGGACGuCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 27665 | 0.82 | 0.259792 |
Target: 5'- uCCAGgAGGACCuGgaGGACCUGCuGGa -3' miRNA: 3'- -GGUCgUCCUGGuCaaCCUGGACGuCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 23419 | 0.82 | 0.248072 |
Target: 5'- aCCuGUAGGACCaucugguccAGUUGGACCUGUGGGn -3' miRNA: 3'- -GGuCGUCCUGG---------UCAACCUGGACGUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 21761 | 0.83 | 0.225948 |
Target: 5'- aCCAGaAGGACCAGUuauuccaguUGGACCUGgAGGa -3' miRNA: 3'- -GGUCgUCCUGGUCA---------ACCUGGACgUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 21985 | 0.83 | 0.225948 |
Target: 5'- uCCAcuuGGACCAGgaGGACCUGCAGGa -3' miRNA: 3'- -GGUcguCCUGGUCaaCCUGGACGUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 23707 | 0.84 | 0.210472 |
Target: 5'- aCCuGCuGGACCAGaUGGACCUGgAGGa -3' miRNA: 3'- -GGuCGuCCUGGUCaACCUGGACgUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 27521 | 0.85 | 0.18671 |
Target: 5'- aCCuGUAGGACCuGaUGGACCUGUAGGa -3' miRNA: 3'- -GGuCGUCCUGGuCaACCUGGACGUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 23383 | 0.85 | 0.184023 |
Target: 5'- aCCuGUGGGACCAGUUGGACCUGgauuugaaggaccuaCAGGa -3' miRNA: 3'- -GGuCGUCCUGGUCAACCUGGAC---------------GUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 26560 | 0.86 | 0.1462 |
Target: 5'- uCCAGgAGGACCuGcUGGACCUGUAGGa -3' miRNA: 3'- -GGUCgUCCUGGuCaACCUGGACGUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 222941 | 0.88 | 0.119142 |
Target: 5'- aCCAGCAGGACCAGgagaaccaguaGGACCaGCAGGa -3' miRNA: 3'- -GGUCGUCCUGGUCaa---------CCUGGaCGUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 22198 | 0.88 | 0.116181 |
Target: 5'- aCCAGCAGGACCAGgaccaccacuaGGACCUGgAGGa -3' miRNA: 3'- -GGUCGUCCUGGUCaa---------CCUGGACgUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 23221 | 0.88 | 0.10825 |
Target: 5'- aCCAGCAGGACCAGgaGGACCaGgAGGa -3' miRNA: 3'- -GGUCGUCCUGGUCaaCCUGGaCgUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 28174 | 0.89 | 0.100318 |
Target: 5'- aCCAGCAGGACCAGUUGGACCaGUuccaccugaAGGn -3' miRNA: 3'- -GGUCGUCCUGGUCAACCUGGaCG---------UCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 28279 | 0.9 | 0.088304 |
Target: 5'- aCCAGUuccgccuGGACCAGUUGGACCUGgAGGa -3' miRNA: 3'- -GGUCGu------CCUGGUCAACCUGGACgUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 22012 | 0.9 | 0.086072 |
Target: 5'- aCCAGCAGGACCAGUUGGACC---AGGa -3' miRNA: 3'- -GGUCGUCCUGGUCAACCUGGacgUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 21877 | 0.9 | 0.081766 |
Target: 5'- aCCAGCAGGACCAGa-GGACCaGCAGGu -3' miRNA: 3'- -GGUCGUCCUGGUCaaCCUGGaCGUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 28111 | 0.94 | 0.049959 |
Target: 5'- uCCuGUAGGACCAGUUGGACCUGgAGGa -3' miRNA: 3'- -GGuCGUCCUGGUCAACCUGGACgUCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 21943 | 0.94 | 0.04867 |
Target: 5'- aCCAGgAGGACCAGUUGGACCUGUuGGa -3' miRNA: 3'- -GGUCgUCCUGGUCAACCUGGACGuCC- -5' |
|||||||
31663 | 3' | -56 | NC_006883.1 | + | 28348 | 0.96 | 0.038438 |
Target: 5'- aCCAGCAGGACCAGUuccgccUGGACCUGgAGGa -3' miRNA: 3'- -GGUCGUCCUGGUCA------ACCUGGACgUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home