miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31663 3' -56 NC_006883.1 + 111686 0.72 0.731442
Target:  5'- aCAGCAGGAacuuaUAGUUGGACUUGUc-- -3'
miRNA:   3'- gGUCGUCCUg----GUCAACCUGGACGucc -5'
31663 3' -56 NC_006883.1 + 23176 0.72 0.721936
Target:  5'- aCCAGCAGGuCCAGUUaaACCUGgAGc -3'
miRNA:   3'- -GGUCGUCCuGGUCAAccUGGACgUCc -5'
31663 3' -56 NC_006883.1 + 223031 0.72 0.720026
Target:  5'- aCCAGUAGGACCAGgauuuccaacaGGACCaguUGCAc- -3'
miRNA:   3'- -GGUCGUCCUGGUCaa---------CCUGG---ACGUcc -5'
31663 3' -56 NC_006883.1 + 27557 0.73 0.712358
Target:  5'- aCCAcCuGGACCAccUGGACCUGgAGGa -3'
miRNA:   3'- -GGUcGuCCUGGUcaACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 21916 0.73 0.683277
Target:  5'- aCCAGCAucaccuugcGGACCuugcGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGU---------CCUGGucaaCCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 27728 0.73 0.66368
Target:  5'- uCCuGUGGGACCuGUcGGACCaGUAGGa -3'
miRNA:   3'- -GGuCGUCCUGGuCAaCCUGGaCGUCC- -5'
31663 3' -56 NC_006883.1 + 26713 0.76 0.546096
Target:  5'- uCCAGgAGGACCuGcUGGACCUGgAGu -3'
miRNA:   3'- -GGUCgUCCUGGuCaACCUGGACgUCc -5'
31663 3' -56 NC_006883.1 + 26650 0.76 0.53651
Target:  5'- aCCAGUuGGACCAGUUccACCUGUGGGn -3'
miRNA:   3'- -GGUCGuCCUGGUCAAccUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 22087 0.76 0.53651
Target:  5'- aCCAcuuGGACCAGgaGGACCUGgAGGa -3'
miRNA:   3'- -GGUcguCCUGGUCaaCCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 24966 0.76 0.517521
Target:  5'- aCCugauGGACCAcUUGGACCUGUAGGa -3'
miRNA:   3'- -GGucguCCUGGUcAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 28507 0.76 0.508126
Target:  5'- aCCAGUcGGACCAGUuccaccUGGACCaGgAGGa -3'
miRNA:   3'- -GGUCGuCCUGGUCA------ACCUGGaCgUCC- -5'
31663 3' -56 NC_006883.1 + 23464 0.76 0.508126
Target:  5'- uCCAGCAGGuCCuccUGGAUCUGguGGu -3'
miRNA:   3'- -GGUCGUCCuGGucaACCUGGACguCC- -5'
31663 3' -56 NC_006883.1 + 21806 0.78 0.410386
Target:  5'- gCCAGCAGGACCAGgaccgccaccUGGACCaGaAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCa---------ACCUGGaCgUCC- -5'
31663 3' -56 NC_006883.1 + 28465 0.78 0.402087
Target:  5'- aCCAGUAGGACCuGgaGGuCCUGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGuCaaCCuGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 23734 0.8 0.339667
Target:  5'- uCCAGgAGGACCuGcUGGACCUGgAGGn -3'
miRNA:   3'- -GGUCgUCCUGGuCaACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 22243 0.8 0.332376
Target:  5'- uCCAGCAGGACCAGgaGGACCacuuGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCaaCCUGGacguCC- -5'
31663 3' -56 NC_006883.1 + 21725 0.8 0.325201
Target:  5'- aCCAGCAGGACCAGUaGGACCa----- -3'
miRNA:   3'- -GGUCGUCCUGGUCAaCCUGGacgucc -5'
31663 3' -56 NC_006883.1 + 23323 0.8 0.318141
Target:  5'- aCCAGCaggaccuugAGGACCAGUUGGACCaccgauaccUGgAGGa -3'
miRNA:   3'- -GGUCG---------UCCUGGUCAACCUGG---------ACgUCC- -5'
31663 3' -56 NC_006883.1 + 22123 0.81 0.307087
Target:  5'- aCCAGCAGGACCAucuccaccacucGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUcaa---------CCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 28228 0.81 0.291061
Target:  5'- aCCAGCAGGACCAGUcGGACCaGUu-- -3'
miRNA:   3'- -GGUCGUCCUGGUCAaCCUGGaCGucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.