Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31663 | 3' | -56 | NC_006883.1 | + | 21725 | 0.8 | 0.325201 |
Target: 5'- aCCAGCAGGACCAGUaGGACCa----- -3' miRNA: 3'- -GGUCGUCCUGGUCAaCCUGGacgucc -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 23323 | 0.8 | 0.318141 |
Target: 5'- aCCAGCaggaccuugAGGACCAGUUGGACCaccgauaccUGgAGGa -3' miRNA: 3'- -GGUCG---------UCCUGGUCAACCUGG---------ACgUCC- -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 22123 | 0.81 | 0.307087 |
Target: 5'- aCCAGCAGGACCAucuccaccacucGGACCUGgAGGa -3' miRNA: 3'- -GGUCGUCCUGGUcaa---------CCUGGACgUCC- -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 28228 | 0.81 | 0.291061 |
Target: 5'- aCCAGCAGGACCAGUcGGACCaGUu-- -3' miRNA: 3'- -GGUCGUCCUGGUCAaCCUGGaCGucc -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 222986 | 0.82 | 0.265819 |
Target: 5'- aCCAGCAGGACCAGgugaaccuugUGGACCaguuccaccaGCAGGn -3' miRNA: 3'- -GGUCGUCCUGGUCa---------ACCUGGa---------CGUCC- -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 27728 | 0.73 | 0.66368 |
Target: 5'- uCCuGUGGGACCuGUcGGACCaGUAGGa -3' miRNA: 3'- -GGuCGUCCUGGuCAaCCUGGaCGUCC- -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 21916 | 0.73 | 0.683277 |
Target: 5'- aCCAGCAucaccuugcGGACCuugcGGACCUGgAGGa -3' miRNA: 3'- -GGUCGU---------CCUGGucaaCCUGGACgUCC- -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 28534 | 0.66 | 0.962059 |
Target: 5'- aCCuGaAGGACCuGUUGGACCaGUuGGn -3' miRNA: 3'- -GGuCgUCCUGGuCAACCUGGaCGuCC- -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 21851 | 0.66 | 0.961389 |
Target: 5'- uCCAGUAGGACCAGgaccaccacucGGACCa----- -3' miRNA: 3'- -GGUCGUCCUGGUCaa---------CCUGGacgucc -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 28297 | 0.67 | 0.951142 |
Target: 5'- aCCAGUAGGACCAGUUGGn-------- -3' miRNA: 3'- -GGUCGUCCUGGUCAACCuggacgucc -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 210943 | 0.67 | 0.94624 |
Target: 5'- aCCAGaaucuacaaguGGACCAGUUGGccaACCaaaUGCAGc -3' miRNA: 3'- -GGUCgu---------CCUGGUCAACC---UGG---ACGUCc -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 26686 | 0.67 | 0.938301 |
Target: 5'- aCCAGUuccACCAccUGGACCUGgAGGa -3' miRNA: 3'- -GGUCGuccUGGUcaACCUGGACgUCC- -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 23343 | 0.67 | 0.933582 |
Target: 5'- ------nGACCAGUUGGACCUGgAGa -3' miRNA: 3'- ggucgucCUGGUCAACCUGGACgUCc -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 23680 | 0.69 | 0.867223 |
Target: 5'- aCCAGCAGGACCAGguccaccACCaGCAc- -3' miRNA: 3'- -GGUCGUCCUGGUCaacc---UGGaCGUcc -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 27485 | 0.69 | 0.894357 |
Target: 5'- aCCuGUAGGACCAGgaGcACCUuGCGGa -3' miRNA: 3'- -GGuCGUCCUGGUCaaCcUGGA-CGUCc -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 26988 | 0.69 | 0.867223 |
Target: 5'- aCCAGgAGGACCuGgaGaACCaGCAGGa -3' miRNA: 3'- -GGUCgUCCUGGuCaaCcUGGaCGUCC- -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 25020 | 0.71 | 0.795287 |
Target: 5'- uCCuGUuGGACCuGgaGGACCUGgAGGa -3' miRNA: 3'- -GGuCGuCCUGGuCaaCCUGGACgUCC- -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 23176 | 0.72 | 0.721936 |
Target: 5'- aCCAGCAGGuCCAGUUaaACCUGgAGc -3' miRNA: 3'- -GGUCGUCCuGGUCAAccUGGACgUCc -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 223031 | 0.72 | 0.720026 |
Target: 5'- aCCAGUAGGACCAGgauuuccaacaGGACCaguUGCAc- -3' miRNA: 3'- -GGUCGUCCUGGUCaa---------CCUGG---ACGUcc -5' |
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31663 | 3' | -56 | NC_006883.1 | + | 27557 | 0.73 | 0.712358 |
Target: 5'- aCCAcCuGGACCAccUGGACCUGgAGGa -3' miRNA: 3'- -GGUcGuCCUGGUcaACCUGGACgUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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