miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31663 3' -56 NC_006883.1 + 26560 0.86 0.1462
Target:  5'- uCCAGgAGGACCuGcUGGACCUGUAGGa -3'
miRNA:   3'- -GGUCgUCCUGGuCaACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 23383 0.85 0.184023
Target:  5'- aCCuGUGGGACCAGUUGGACCUGgauuugaaggaccuaCAGGa -3'
miRNA:   3'- -GGuCGUCCUGGUCAACCUGGAC---------------GUCC- -5'
31663 3' -56 NC_006883.1 + 27521 0.85 0.18671
Target:  5'- aCCuGUAGGACCuGaUGGACCUGUAGGa -3'
miRNA:   3'- -GGuCGUCCUGGuCaACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 23707 0.84 0.210472
Target:  5'- aCCuGCuGGACCAGaUGGACCUGgAGGa -3'
miRNA:   3'- -GGuCGuCCUGGUCaACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 21761 0.83 0.225948
Target:  5'- aCCAGaAGGACCAGUuauuccaguUGGACCUGgAGGa -3'
miRNA:   3'- -GGUCgUCCUGGUCA---------ACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 21985 0.83 0.225948
Target:  5'- uCCAcuuGGACCAGgaGGACCUGCAGGa -3'
miRNA:   3'- -GGUcguCCUGGUCaaCCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 23419 0.82 0.248072
Target:  5'- aCCuGUAGGACCaucugguccAGUUGGACCUGUGGGn -3'
miRNA:   3'- -GGuCGUCCUGG---------UCAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 27593 0.82 0.259792
Target:  5'- uCCAGgAGGACCuGgaGGACCUGCuGGa -3'
miRNA:   3'- -GGUCgUCCUGGuCaaCCUGGACGuCC- -5'
31663 3' -56 NC_006883.1 + 27665 0.82 0.259792
Target:  5'- uCCAGgAGGACCuGgaGGACCUGCuGGa -3'
miRNA:   3'- -GGUCgUCCUGGuCaaCCUGGACGuCC- -5'
31663 3' -56 NC_006883.1 + 222986 0.82 0.265819
Target:  5'- aCCAGCAGGACCAGgugaaccuugUGGACCaguuccaccaGCAGGn -3'
miRNA:   3'- -GGUCGUCCUGGUCa---------ACCUGGa---------CGUCC- -5'
31663 3' -56 NC_006883.1 + 28228 0.81 0.291061
Target:  5'- aCCAGCAGGACCAGUcGGACCaGUu-- -3'
miRNA:   3'- -GGUCGUCCUGGUCAaCCUGGaCGucc -5'
31663 3' -56 NC_006883.1 + 22123 0.81 0.307087
Target:  5'- aCCAGCAGGACCAucuccaccacucGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUcaa---------CCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 23323 0.8 0.318141
Target:  5'- aCCAGCaggaccuugAGGACCAGUUGGACCaccgauaccUGgAGGa -3'
miRNA:   3'- -GGUCG---------UCCUGGUCAACCUGG---------ACgUCC- -5'
31663 3' -56 NC_006883.1 + 21725 0.8 0.325201
Target:  5'- aCCAGCAGGACCAGUaGGACCa----- -3'
miRNA:   3'- -GGUCGUCCUGGUCAaCCUGGacgucc -5'
31663 3' -56 NC_006883.1 + 22243 0.8 0.332376
Target:  5'- uCCAGCAGGACCAGgaGGACCacuuGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCaaCCUGGacguCC- -5'
31663 3' -56 NC_006883.1 + 23734 0.8 0.339667
Target:  5'- uCCAGgAGGACCuGcUGGACCUGgAGGn -3'
miRNA:   3'- -GGUCgUCCUGGuCaACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 28465 0.78 0.402087
Target:  5'- aCCAGUAGGACCuGgaGGuCCUGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGuCaaCCuGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 21806 0.78 0.410386
Target:  5'- gCCAGCAGGACCAGgaccgccaccUGGACCaGaAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCa---------ACCUGGaCgUCC- -5'
31663 3' -56 NC_006883.1 + 28507 0.76 0.508126
Target:  5'- aCCAGUcGGACCAGUuccaccUGGACCaGgAGGa -3'
miRNA:   3'- -GGUCGuCCUGGUCA------ACCUGGaCgUCC- -5'
31663 3' -56 NC_006883.1 + 23464 0.76 0.508126
Target:  5'- uCCAGCAGGuCCuccUGGAUCUGguGGu -3'
miRNA:   3'- -GGUCGUCCuGGucaACCUGGACguCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.