miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31663 3' -56 NC_006883.1 + 26785 1.13 0.002827
Target:  5'- aCCAGCAGGACCAGUUGGACCUGCAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 22057 1.1 0.004829
Target:  5'- aCCAGCAGGACCAGUUGGACCUGUAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 27764 1.06 0.007607
Target:  5'- uCCAGCAGGACCAGUUGGACCUGUGGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 23251 1.05 0.009418
Target:  5'- aCCAGCAGGACCAGUUGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 26812 1.05 0.009673
Target:  5'- aCCAGCAGGACCAGUUGGACCUGguGGn -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGACguCC- -5'
31663 3' -56 NC_006883.1 + 23934 0.98 0.025199
Target:  5'- aCCAGUuGGACCAGUUGGACCUGUAGGa -3'
miRNA:   3'- -GGUCGuCCUGGUCAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 23149 0.98 0.025199
Target:  5'- aCCAGCAGGACCAGUUGGACCUGgAGc -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGACgUCc -5'
31663 3' -56 NC_006883.1 + 28138 0.98 0.028762
Target:  5'- aCCAGUuGGACCAGUUGGACCUGUAGGu -3'
miRNA:   3'- -GGUCGuCCUGGUCAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 223079 0.97 0.03282
Target:  5'- aCCAGCAGGACCAGgaGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCaaCCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 26623 0.97 0.03282
Target:  5'- aCCAGCAGGACCAGUUGGACCUGUu-- -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGACGucc -5'
31663 3' -56 NC_006883.1 + 28348 0.96 0.038438
Target:  5'- aCCAGCAGGACCAGUuccgccUGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCA------ACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 21943 0.94 0.04867
Target:  5'- aCCAGgAGGACCAGUUGGACCUGUuGGa -3'
miRNA:   3'- -GGUCgUCCUGGUCAACCUGGACGuCC- -5'
31663 3' -56 NC_006883.1 + 28111 0.94 0.049959
Target:  5'- uCCuGUAGGACCAGUUGGACCUGgAGGa -3'
miRNA:   3'- -GGuCGUCCUGGUCAACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 21877 0.9 0.081766
Target:  5'- aCCAGCAGGACCAGa-GGACCaGCAGGu -3'
miRNA:   3'- -GGUCGUCCUGGUCaaCCUGGaCGUCC- -5'
31663 3' -56 NC_006883.1 + 22012 0.9 0.086072
Target:  5'- aCCAGCAGGACCAGUUGGACC---AGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGacgUCC- -5'
31663 3' -56 NC_006883.1 + 28279 0.9 0.088304
Target:  5'- aCCAGUuccgccuGGACCAGUUGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGu------CCUGGUCAACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 28174 0.89 0.100318
Target:  5'- aCCAGCAGGACCAGUUGGACCaGUuccaccugaAGGn -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGaCG---------UCC- -5'
31663 3' -56 NC_006883.1 + 23221 0.88 0.10825
Target:  5'- aCCAGCAGGACCAGgaGGACCaGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCaaCCUGGaCgUCC- -5'
31663 3' -56 NC_006883.1 + 22198 0.88 0.116181
Target:  5'- aCCAGCAGGACCAGgaccaccacuaGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCaa---------CCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 222941 0.88 0.119142
Target:  5'- aCCAGCAGGACCAGgagaaccaguaGGACCaGCAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCaa---------CCUGGaCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.