miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31663 3' -56 NC_006883.1 + 21725 0.8 0.325201
Target:  5'- aCCAGCAGGACCAGUaGGACCa----- -3'
miRNA:   3'- -GGUCGUCCUGGUCAaCCUGGacgucc -5'
31663 3' -56 NC_006883.1 + 21761 0.83 0.225948
Target:  5'- aCCAGaAGGACCAGUuauuccaguUGGACCUGgAGGa -3'
miRNA:   3'- -GGUCgUCCUGGUCA---------ACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 21806 0.78 0.410386
Target:  5'- gCCAGCAGGACCAGgaccgccaccUGGACCaGaAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCa---------ACCUGGaCgUCC- -5'
31663 3' -56 NC_006883.1 + 21851 0.66 0.961389
Target:  5'- uCCAGUAGGACCAGgaccaccacucGGACCa----- -3'
miRNA:   3'- -GGUCGUCCUGGUCaa---------CCUGGacgucc -5'
31663 3' -56 NC_006883.1 + 21877 0.9 0.081766
Target:  5'- aCCAGCAGGACCAGa-GGACCaGCAGGu -3'
miRNA:   3'- -GGUCGUCCUGGUCaaCCUGGaCGUCC- -5'
31663 3' -56 NC_006883.1 + 21916 0.73 0.683277
Target:  5'- aCCAGCAucaccuugcGGACCuugcGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGU---------CCUGGucaaCCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 21943 0.94 0.04867
Target:  5'- aCCAGgAGGACCAGUUGGACCUGUuGGa -3'
miRNA:   3'- -GGUCgUCCUGGUCAACCUGGACGuCC- -5'
31663 3' -56 NC_006883.1 + 21985 0.83 0.225948
Target:  5'- uCCAcuuGGACCAGgaGGACCUGCAGGa -3'
miRNA:   3'- -GGUcguCCUGGUCaaCCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 22012 0.9 0.086072
Target:  5'- aCCAGCAGGACCAGUUGGACC---AGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGacgUCC- -5'
31663 3' -56 NC_006883.1 + 22057 1.1 0.004829
Target:  5'- aCCAGCAGGACCAGUUGGACCUGUAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 22087 0.76 0.53651
Target:  5'- aCCAcuuGGACCAGgaGGACCUGgAGGa -3'
miRNA:   3'- -GGUcguCCUGGUCaaCCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 22123 0.81 0.307087
Target:  5'- aCCAGCAGGACCAucuccaccacucGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUcaa---------CCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 22198 0.88 0.116181
Target:  5'- aCCAGCAGGACCAGgaccaccacuaGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCaa---------CCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 22243 0.8 0.332376
Target:  5'- uCCAGCAGGACCAGgaGGACCacuuGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCaaCCUGGacguCC- -5'
31663 3' -56 NC_006883.1 + 22889 0.68 0.918094
Target:  5'- uCCuGCuGGugcuCCAGguuuaacUGGACCUGCuGGu -3'
miRNA:   3'- -GGuCGuCCu---GGUCa------ACCUGGACGuCC- -5'
31663 3' -56 NC_006883.1 + 23140 0.66 0.968317
Target:  5'- uCCAaCuGGACCAGaUGGuCCUaCAGGu -3'
miRNA:   3'- -GGUcGuCCUGGUCaACCuGGAcGUCC- -5'
31663 3' -56 NC_006883.1 + 23149 0.98 0.025199
Target:  5'- aCCAGCAGGACCAGUUGGACCUGgAGc -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGACgUCc -5'
31663 3' -56 NC_006883.1 + 23176 0.72 0.721936
Target:  5'- aCCAGCAGGuCCAGUUaaACCUGgAGc -3'
miRNA:   3'- -GGUCGUCCuGGUCAAccUGGACgUCc -5'
31663 3' -56 NC_006883.1 + 23221 0.88 0.10825
Target:  5'- aCCAGCAGGACCAGgaGGACCaGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCaaCCUGGaCgUCC- -5'
31663 3' -56 NC_006883.1 + 23251 1.05 0.009418
Target:  5'- aCCAGCAGGACCAGUUGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGACgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.