miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31663 3' -56 NC_006883.1 + 223079 0.97 0.03282
Target:  5'- aCCAGCAGGACCAGgaGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCaaCCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 223031 0.72 0.720026
Target:  5'- aCCAGUAGGACCAGgauuuccaacaGGACCaguUGCAc- -3'
miRNA:   3'- -GGUCGUCCUGGUCaa---------CCUGG---ACGUcc -5'
31663 3' -56 NC_006883.1 + 222986 0.82 0.265819
Target:  5'- aCCAGCAGGACCAGgugaaccuugUGGACCaguuccaccaGCAGGn -3'
miRNA:   3'- -GGUCGUCCUGGUCa---------ACCUGGa---------CGUCC- -5'
31663 3' -56 NC_006883.1 + 222941 0.88 0.119142
Target:  5'- aCCAGCAGGACCAGgagaaccaguaGGACCaGCAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCaa---------CCUGGaCGUCC- -5'
31663 3' -56 NC_006883.1 + 210943 0.67 0.94624
Target:  5'- aCCAGaaucuacaaguGGACCAGUUGGccaACCaaaUGCAGc -3'
miRNA:   3'- -GGUCgu---------CCUGGUCAACC---UGG---ACGUCc -5'
31663 3' -56 NC_006883.1 + 112299 0.67 0.951142
Target:  5'- uCCAGCugaugguGGuACUGG-UGGAUCUGguGGu -3'
miRNA:   3'- -GGUCGu------CC-UGGUCaACCUGGACguCC- -5'
31663 3' -56 NC_006883.1 + 111850 0.68 0.92557
Target:  5'- aCAGCAGGACaaucauauacuguagUAGUuggugauggUGGAgCUGguGGa -3'
miRNA:   3'- gGUCGUCCUG---------------GUCA---------ACCUgGACguCC- -5'
31663 3' -56 NC_006883.1 + 111686 0.72 0.731442
Target:  5'- aCAGCAGGAacuuaUAGUUGGACUUGUc-- -3'
miRNA:   3'- gGUCGUCCUg----GUCAACCUGGACGucc -5'
31663 3' -56 NC_006883.1 + 105876 0.68 0.918094
Target:  5'- -uGGCAGGAUUGGaugaUGGuCCUGguGGa -3'
miRNA:   3'- ggUCGUCCUGGUCa---ACCuGGACguCC- -5'
31663 3' -56 NC_006883.1 + 28534 0.66 0.962059
Target:  5'- aCCuGaAGGACCuGUUGGACCaGUuGGn -3'
miRNA:   3'- -GGuCgUCCUGGuCAACCUGGaCGuCC- -5'
31663 3' -56 NC_006883.1 + 28507 0.76 0.508126
Target:  5'- aCCAGUcGGACCAGUuccaccUGGACCaGgAGGa -3'
miRNA:   3'- -GGUCGuCCUGGUCA------ACCUGGaCgUCC- -5'
31663 3' -56 NC_006883.1 + 28465 0.78 0.402087
Target:  5'- aCCAGUAGGACCuGgaGGuCCUGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGuCaaCCuGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 28420 0.66 0.968317
Target:  5'- aCCAuCAGaACCuGgaGGACCUGgAGGa -3'
miRNA:   3'- -GGUcGUCcUGGuCaaCCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 28348 0.96 0.038438
Target:  5'- aCCAGCAGGACCAGUuccgccUGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCA------ACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 28297 0.67 0.951142
Target:  5'- aCCAGUAGGACCAGUUGGn-------- -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCuggacgucc -5'
31663 3' -56 NC_006883.1 + 28279 0.9 0.088304
Target:  5'- aCCAGUuccgccuGGACCAGUUGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGu------CCUGGUCAACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 28228 0.81 0.291061
Target:  5'- aCCAGCAGGACCAGUcGGACCaGUu-- -3'
miRNA:   3'- -GGUCGUCCUGGUCAaCCUGGaCGucc -5'
31663 3' -56 NC_006883.1 + 28174 0.89 0.100318
Target:  5'- aCCAGCAGGACCAGUUGGACCaGUuccaccugaAGGn -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGaCG---------UCC- -5'
31663 3' -56 NC_006883.1 + 28138 0.98 0.028762
Target:  5'- aCCAGUuGGACCAGUUGGACCUGUAGGu -3'
miRNA:   3'- -GGUCGuCCUGGUCAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 28111 0.94 0.049959
Target:  5'- uCCuGUAGGACCAGUUGGACCUGgAGGa -3'
miRNA:   3'- -GGuCGUCCUGGUCAACCUGGACgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.