miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31663 3' -56 NC_006883.1 + 23323 0.8 0.318141
Target:  5'- aCCAGCaggaccuugAGGACCAGUUGGACCaccgauaccUGgAGGa -3'
miRNA:   3'- -GGUCG---------UCCUGGUCAACCUGG---------ACgUCC- -5'
31663 3' -56 NC_006883.1 + 23343 0.67 0.933582
Target:  5'- ------nGACCAGUUGGACCUGgAGa -3'
miRNA:   3'- ggucgucCUGGUCAACCUGGACgUCc -5'
31663 3' -56 NC_006883.1 + 23383 0.85 0.184023
Target:  5'- aCCuGUGGGACCAGUUGGACCUGgauuugaaggaccuaCAGGa -3'
miRNA:   3'- -GGuCGUCCUGGUCAACCUGGAC---------------GUCC- -5'
31663 3' -56 NC_006883.1 + 23419 0.82 0.248072
Target:  5'- aCCuGUAGGACCaucugguccAGUUGGACCUGUGGGn -3'
miRNA:   3'- -GGuCGUCCUGG---------UCAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 23464 0.76 0.508126
Target:  5'- uCCAGCAGGuCCuccUGGAUCUGguGGu -3'
miRNA:   3'- -GGUCGUCCuGGucaACCUGGACguCC- -5'
31663 3' -56 NC_006883.1 + 23680 0.69 0.867223
Target:  5'- aCCAGCAGGACCAGguccaccACCaGCAc- -3'
miRNA:   3'- -GGUCGUCCUGGUCaacc---UGGaCGUcc -5'
31663 3' -56 NC_006883.1 + 23707 0.84 0.210472
Target:  5'- aCCuGCuGGACCAGaUGGACCUGgAGGa -3'
miRNA:   3'- -GGuCGuCCUGGUCaACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 23734 0.8 0.339667
Target:  5'- uCCAGgAGGACCuGcUGGACCUGgAGGn -3'
miRNA:   3'- -GGUCgUCCUGGuCaACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 23934 0.98 0.025199
Target:  5'- aCCAGUuGGACCAGUUGGACCUGUAGGa -3'
miRNA:   3'- -GGUCGuCCUGGUCAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 24966 0.76 0.517521
Target:  5'- aCCugauGGACCAcUUGGACCUGUAGGa -3'
miRNA:   3'- -GGucguCCUGGUcAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 25020 0.71 0.795287
Target:  5'- uCCuGUuGGACCuGgaGGACCUGgAGGa -3'
miRNA:   3'- -GGuCGuCCUGGuCaaCCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 26272 0.68 0.906662
Target:  5'- uCCAGCAGGuCCuacaGGuCCaGCAGGu -3'
miRNA:   3'- -GGUCGUCCuGGucaaCCuGGaCGUCC- -5'
31663 3' -56 NC_006883.1 + 26488 0.68 0.906662
Target:  5'- uCCuGCuGGugCAacUGGuCCUGCAGGu -3'
miRNA:   3'- -GGuCGuCCugGUcaACCuGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 26560 0.86 0.1462
Target:  5'- uCCAGgAGGACCuGcUGGACCUGUAGGa -3'
miRNA:   3'- -GGUCgUCCUGGuCaACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 26623 0.97 0.03282
Target:  5'- aCCAGCAGGACCAGUUGGACCUGUu-- -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGACGucc -5'
31663 3' -56 NC_006883.1 + 26650 0.76 0.53651
Target:  5'- aCCAGUuGGACCAGUUccACCUGUGGGn -3'
miRNA:   3'- -GGUCGuCCUGGUCAAccUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 26686 0.67 0.938301
Target:  5'- aCCAGUuccACCAccUGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGuccUGGUcaACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 26713 0.76 0.546096
Target:  5'- uCCAGgAGGACCuGcUGGACCUGgAGu -3'
miRNA:   3'- -GGUCgUCCUGGuCaACCUGGACgUCc -5'
31663 3' -56 NC_006883.1 + 26785 1.13 0.002827
Target:  5'- aCCAGCAGGACCAGUUGGACCUGCAGGa -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 26812 1.05 0.009673
Target:  5'- aCCAGCAGGACCAGUUGGACCUGguGGn -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCUGGACguCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.