miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31664 3' -57.7 NC_006883.1 + 27551 1.11 0.002745
Target:  5'- uGGACCACCUGGACCUGGAGGACCAUCu -3'
miRNA:   3'- -CCUGGUGGACCUGGACCUCCUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 26678 1.01 0.012407
Target:  5'- -cACCACCUGGACCUGGAGGACCGUCu -3'
miRNA:   3'- ccUGGUGGACCUGGACCUCCUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 22219 1 0.014156
Target:  5'- uGGACCAUCUGGACCUGGAGGACCAg- -3'
miRNA:   3'- -CCUGGUGGACCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 28267 0.99 0.01573
Target:  5'- uGGACCAgUUGGACCUGGAGGACCAUCu -3'
miRNA:   3'- -CCUGGUgGACCUGGACCUCCUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 23728 0.96 0.028035
Target:  5'- aGGACCugCUGGACCUGGAGGACCu-- -3'
miRNA:   3'- -CCUGGugGACCUGGACCUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 28105 0.93 0.03835
Target:  5'- aGGACCAgUUGGACCUGGAGGACCAg- -3'
miRNA:   3'- -CCUGGUgGACCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 22165 0.93 0.041463
Target:  5'- aGGACCACCacuaGGACCUGGAGGACCAg- -3'
miRNA:   3'- -CCUGGUGGa---CCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 23245 0.93 0.041463
Target:  5'- aGGACCAgUUGGACCUGGAGGACCAc- -3'
miRNA:   3'- -CCUGGUgGACCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 28501 0.92 0.047209
Target:  5'- cGGACCaguuccACCUGGACCaGGAGGACCAUCu -3'
miRNA:   3'- -CCUGG------UGGACCUGGaCCUCCUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 28342 0.91 0.058052
Target:  5'- aGGACCaguuccGCCUGGACCUGGAGGACCu-- -3'
miRNA:   3'- -CCUGG------UGGACCUGGACCUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 23701 0.9 0.067731
Target:  5'- uGGACCAgaUGGACCUGGAGGACCAg- -3'
miRNA:   3'- -CCUGGUggACCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 22090 0.89 0.076968
Target:  5'- aGGACCACUUGGACCaGGAGGACCu-- -3'
miRNA:   3'- -CCUGGUGGACCUGGaCCUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 27650 0.87 0.09671
Target:  5'- aGGACCugCUGGACCUGGAGuACCAg- -3'
miRNA:   3'- -CCUGGugGACCUGGACCUCcUGGUag -5'
31664 3' -57.7 NC_006883.1 + 22051 0.87 0.09671
Target:  5'- aGGACCAgUUGGACCUGuAGGACCGUCu -3'
miRNA:   3'- -CCUGGUgGACCUGGACcUCCUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 27497 0.87 0.09671
Target:  5'- aGGACCugCUGGACCUGuAGGACCAg- -3'
miRNA:   3'- -CCUGGugGACCUGGACcUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 26707 0.87 0.09671
Target:  5'- aGGACCugCUGGACCUGGAGuACCAg- -3'
miRNA:   3'- -CCUGGugGACCUGGACCUCcUGGUag -5'
31664 3' -57.7 NC_006883.1 + 26806 0.87 0.101707
Target:  5'- aGGACCAgUUGGACCUGGuGGACCAg- -3'
miRNA:   3'- -CCUGGUgGACCUGGACCuCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 21794 0.87 0.103253
Target:  5'- aGGACCGCCaccuggaccagaaGGACCUGGAGGACCAg- -3'
miRNA:   3'- -CCUGGUGGa------------CCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 24960 0.85 0.140562
Target:  5'- uGGACCACUUGGACCUGuAGGACCu-- -3'
miRNA:   3'- -CCUGGUGGACCUGGACcUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 21755 0.84 0.147634
Target:  5'- aGGACCAguuauuCCaguUGGACCUGGAGGACCAg- -3'
miRNA:   3'- -CCUGGU------GG---ACCUGGACCUCCUGGUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.