miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31664 3' -57.7 NC_006883.1 + 21755 0.84 0.147634
Target:  5'- aGGACCAguuauuCCaguUGGACCUGGAGGACCAg- -3'
miRNA:   3'- -CCUGGU------GG---ACCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 21794 0.87 0.103253
Target:  5'- aGGACCGCCaccuggaccagaaGGACCUGGAGGACCAg- -3'
miRNA:   3'- -CCUGGUGGa------------CCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 21839 0.69 0.789638
Target:  5'- aGGACCACCacucGGACCaacaucaccuuGAGGGCCAg- -3'
miRNA:   3'- -CCUGGUGGa---CCUGGac---------CUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 21919 0.82 0.203875
Target:  5'- uGGACCagcaucaccuugcggACCUugcGGACCUGGAGGACCAc- -3'
miRNA:   3'- -CCUGG---------------UGGA---CCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 21961 0.66 0.935244
Target:  5'- aGGACCAggagauCCaGuACCaGGAGGACCAg- -3'
miRNA:   3'- -CCUGGU------GGaCcUGGaCCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 21991 0.8 0.279034
Target:  5'- aGGACCuccACUUGGACCaGGAGGACCu-- -3'
miRNA:   3'- -CCUGG---UGGACCUGGaCCUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 22051 0.87 0.09671
Target:  5'- aGGACCAgUUGGACCUGuAGGACCGUCu -3'
miRNA:   3'- -CCUGGUgGACCUGGACcUCCUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 22090 0.89 0.076968
Target:  5'- aGGACCACUUGGACCaGGAGGACCu-- -3'
miRNA:   3'- -CCUGGUGGACCUGGaCCUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 22133 0.77 0.377784
Target:  5'- -aACCACUUGGACCaGcAGGACCAUCu -3'
miRNA:   3'- ccUGGUGGACCUGGaCcUCCUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 22165 0.93 0.041463
Target:  5'- aGGACCACCacuaGGACCUGGAGGACCAg- -3'
miRNA:   3'- -CCUGGUGGa---CCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 22219 1 0.014156
Target:  5'- uGGACCAUCUGGACCUGGAGGACCAg- -3'
miRNA:   3'- -CCUGGUGGACCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 22246 0.7 0.773762
Target:  5'- aGAuCCAgCaGGACCaGGAGGACCAc- -3'
miRNA:   3'- cCU-GGUgGaCCUGGaCCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 22913 0.67 0.903095
Target:  5'- uGGACCugCUGGuCCUGauGGuCCAa- -3'
miRNA:   3'- -CCUGGugGACCuGGACcuCCuGGUag -5'
31664 3' -57.7 NC_006883.1 + 23143 0.8 0.279034
Target:  5'- aGGACCAgUUGGACCUGGAGcACCuggAUCg -3'
miRNA:   3'- -CCUGGUgGACCUGGACCUCcUGG---UAG- -5'
31664 3' -57.7 NC_006883.1 + 23197 0.78 0.32564
Target:  5'- aGGACCACUUGGACCaucAGGACCAg- -3'
miRNA:   3'- -CCUGGUGGACCUGGaccUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 23222 0.71 0.699333
Target:  5'- -nACCAgCaGGACCaGGAGGACCAg- -3'
miRNA:   3'- ccUGGUgGaCCUGGaCCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 23245 0.93 0.041463
Target:  5'- aGGACCAgUUGGACCUGGAGGACCAc- -3'
miRNA:   3'- -CCUGGUgGACCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 23299 0.81 0.227111
Target:  5'- uGGACCACCgauACCUGGAGGACCu-- -3'
miRNA:   3'- -CCUGGUGGaccUGGACCUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 23344 0.82 0.211714
Target:  5'- aGGACCAgUUGGACCUGGAGaACCAg- -3'
miRNA:   3'- -CCUGGUgGACCUGGACCUCcUGGUag -5'
31664 3' -57.7 NC_006883.1 + 23377 0.78 0.32564
Target:  5'- gGGACCAgUUGGACCUGGAuuugaaGGACCu-- -3'
miRNA:   3'- -CCUGGUgGACCUGGACCU------CCUGGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.