miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31664 3' -57.7 NC_006883.1 + 223839 0.66 0.939842
Target:  5'- uGGAUUAUCUGcACCUGGAucaGGAgCAUUu -3'
miRNA:   3'- -CCUGGUGGACcUGGACCU---CCUgGUAG- -5'
31664 3' -57.7 NC_006883.1 + 223073 0.83 0.166747
Target:  5'- aGGACCAggaGGACCUGGAGGACCAa- -3'
miRNA:   3'- -CCUGGUggaCCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 223046 0.73 0.582657
Target:  5'- aGGACCACCagaaGGACCaGuAGGACCAg- -3'
miRNA:   3'- -CCUGGUGGa---CCUGGaCcUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 222944 0.69 0.791377
Target:  5'- aGGACCAgCaGGACCaGGAGaACCAg- -3'
miRNA:   3'- -CCUGGUgGaCCUGGaCCUCcUGGUag -5'
31664 3' -57.7 NC_006883.1 + 139209 0.66 0.939842
Target:  5'- uGGACCACCUGGuaUUGGAaaGACUAc- -3'
miRNA:   3'- -CCUGGUGGACCugGACCUc-CUGGUag -5'
31664 3' -57.7 NC_006883.1 + 28572 0.75 0.497469
Target:  5'- ---gCACCugaaguuccuggUGGACCUGGAGGACCAc- -3'
miRNA:   3'- ccugGUGG------------ACCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 28528 0.73 0.582657
Target:  5'- aGGACCugUUGGACCaGuuGGACCAg- -3'
miRNA:   3'- -CCUGGugGACCUGGaCcuCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 28501 0.92 0.047209
Target:  5'- cGGACCaguuccACCUGGACCaGGAGGACCAUCu -3'
miRNA:   3'- -CCUGG------UGGACCUGGaCCUCCUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 28466 0.74 0.525338
Target:  5'- -cACCaguaggACCUGGAgguCCUGGAGGACCAc- -3'
miRNA:   3'- ccUGG------UGGACCU---GGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 28421 0.74 0.515979
Target:  5'- -aACCaucagaACCUggaGGACCUGGAGGACCAc- -3'
miRNA:   3'- ccUGG------UGGA---CCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 28368 0.7 0.737214
Target:  5'- ---gCACCaGGAgguCCUGGAGGACCAg- -3'
miRNA:   3'- ccugGUGGaCCU---GGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 28342 0.91 0.058052
Target:  5'- aGGACCaguuccGCCUGGACCUGGAGGACCu-- -3'
miRNA:   3'- -CCUGG------UGGACCUGGACCUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 28267 0.99 0.01573
Target:  5'- uGGACCAgUUGGACCUGGAGGACCAUCu -3'
miRNA:   3'- -CCUGGUgGACCUGGACCUCCUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 28231 0.67 0.884133
Target:  5'- aGGACCAgCaGGACCaGucGGACCAg- -3'
miRNA:   3'- -CCUGGUgGaCCUGGaCcuCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 28168 0.7 0.773762
Target:  5'- aGGACCAgUUGGACCaguuccaccUGaAGGACCAg- -3'
miRNA:   3'- -CCUGGUgGACCUGG---------ACcUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 28132 0.7 0.737214
Target:  5'- uGGACCAgUUGGACCUGuAGGuCCu-- -3'
miRNA:   3'- -CCUGGUgGACCUGGACcUCCuGGuag -5'
31664 3' -57.7 NC_006883.1 + 28105 0.93 0.03835
Target:  5'- aGGACCAgUUGGACCUGGAGGACCAg- -3'
miRNA:   3'- -CCUGGUgGACCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 27758 0.82 0.211714
Target:  5'- aGGACCAgUUGGACCUGuGGGACCAg- -3'
miRNA:   3'- -CCUGGUgGACCUGGACcUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 27731 0.67 0.896984
Target:  5'- uGGuCCugUgGGACCUGucGGACCAg- -3'
miRNA:   3'- -CCuGGugGaCCUGGACcuCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 27650 0.87 0.09671
Target:  5'- aGGACCugCUGGACCUGGAGuACCAg- -3'
miRNA:   3'- -CCUGGugGACCUGGACCUCcUGGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.