miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31664 3' -57.7 NC_006883.1 + 23391 0.66 0.930429
Target:  5'- uGGACU--CUGGugCUGGugguGGACCugGUCc -3'
miRNA:   3'- -CCUGGugGACCugGACCu---CCUGG--UAG- -5'
31664 3' -57.7 NC_006883.1 + 23404 0.7 0.737214
Target:  5'- uGGuCCAgUUGGACCUGuGGGACCu-- -3'
miRNA:   3'- -CCuGGUgGACCUGGACcUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 23438 0.81 0.237895
Target:  5'- -uAUUACCUGGACCUGGuggaccuguAGGACCAUCu -3'
miRNA:   3'- ccUGGUGGACCUGGACC---------UCCUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 23470 0.69 0.824978
Target:  5'- aGGuCCuCCUGGAUCUGGugguGGugCAa- -3'
miRNA:   3'- -CCuGGuGGACCUGGACCu---CCugGUag -5'
31664 3' -57.7 NC_006883.1 + 23701 0.9 0.067731
Target:  5'- uGGACCAgaUGGACCUGGAGGACCAg- -3'
miRNA:   3'- -CCUGGUggACCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 23728 0.96 0.028035
Target:  5'- aGGACCugCUGGACCUGGAGGACCu-- -3'
miRNA:   3'- -CCUGGugGACCUGGACCUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 23928 0.78 0.347314
Target:  5'- uGGACCAgUUGGACCUGuAGGACCu-- -3'
miRNA:   3'- -CCUGGUgGACCUGGACcUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 24960 0.85 0.140562
Target:  5'- uGGACCACUUGGACCUGuAGGACCu-- -3'
miRNA:   3'- -CCUGGUGGACCUGGACcUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 24987 0.67 0.890662
Target:  5'- aGGACCACUUGGACCacUu--GGACCu-- -3'
miRNA:   3'- -CCUGGUGGACCUGG--AccuCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 25014 0.8 0.279034
Target:  5'- uGGACCuggaGGACCUGGAGGACCGc- -3'
miRNA:   3'- -CCUGGuggaCCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 26554 0.84 0.158849
Target:  5'- aGGACCugCUGGACCUGuAGGACCu-- -3'
miRNA:   3'- -CCUGGugGACCUGGACcUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 26617 0.75 0.497469
Target:  5'- aGGACCAgUUGGACCUGuuGcACCAUCa -3'
miRNA:   3'- -CCUGGUgGACCUGGACcuCcUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 26653 0.69 0.791377
Target:  5'- uGGACCAgUUGGACCaguuccaccUGuGGGACCAg- -3'
miRNA:   3'- -CCUGGUgGACCUGG---------ACcUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 26678 1.01 0.012407
Target:  5'- -cACCACCUGGACCUGGAGGACCGUCu -3'
miRNA:   3'- ccUGGUGGACCUGGACCUCCUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 26707 0.87 0.09671
Target:  5'- aGGACCugCUGGACCUGGAGuACCAg- -3'
miRNA:   3'- -CCUGGugGACCUGGACCUCcUGGUag -5'
31664 3' -57.7 NC_006883.1 + 26779 0.82 0.211714
Target:  5'- aGGACCAgUUGGACCUGcAGGACCAg- -3'
miRNA:   3'- -CCUGGUgGACCUGGACcUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 26806 0.87 0.101707
Target:  5'- aGGACCAgUUGGACCUGGuGGACCAg- -3'
miRNA:   3'- -CCUGGUgGACCUGGACCuCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 27497 0.87 0.09671
Target:  5'- aGGACCugCUGGACCUGuAGGACCAg- -3'
miRNA:   3'- -CCUGGugGACCUGGACcUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 27551 1.11 0.002745
Target:  5'- uGGACCACCUGGACCUGGAGGACCAUCu -3'
miRNA:   3'- -CCUGGUGGACCUGGACCUCCUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 27603 0.71 0.7089
Target:  5'- -cACCAUCauuuccaggaGGACCUGGAGGACCu-- -3'
miRNA:   3'- ccUGGUGGa---------CCUGGACCUCCUGGuag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.