miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31664 3' -57.7 NC_006883.1 + 28528 0.73 0.582657
Target:  5'- aGGACCugUUGGACCaGuuGGACCAg- -3'
miRNA:   3'- -CCUGGugGACCUGGaCcuCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 28466 0.74 0.525338
Target:  5'- -cACCaguaggACCUGGAgguCCUGGAGGACCAc- -3'
miRNA:   3'- ccUGG------UGGACCU---GGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 28421 0.74 0.515979
Target:  5'- -aACCaucagaACCUggaGGACCUGGAGGACCAc- -3'
miRNA:   3'- ccUGG------UGGA---CCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 26617 0.75 0.497469
Target:  5'- aGGACCAgUUGGACCUGuuGcACCAUCa -3'
miRNA:   3'- -CCUGGUgGACCUGGACcuCcUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 28572 0.75 0.497469
Target:  5'- ---gCACCugaaguuccuggUGGACCUGGAGGACCAc- -3'
miRNA:   3'- ccugGUGG------------ACCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 22133 0.77 0.377784
Target:  5'- -aACCACUUGGACCaGcAGGACCAUCu -3'
miRNA:   3'- ccUGGUGGACCUGGaCcUCCUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 23928 0.78 0.347314
Target:  5'- uGGACCAgUUGGACCUGuAGGACCu-- -3'
miRNA:   3'- -CCUGGUgGACCUGGACcUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 23377 0.78 0.32564
Target:  5'- gGGACCAgUUGGACCUGGAuuugaaGGACCu-- -3'
miRNA:   3'- -CCUGGUgGACCUGGACCU------CCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 23197 0.78 0.32564
Target:  5'- aGGACCACUUGGACCaucAGGACCAg- -3'
miRNA:   3'- -CCUGGUGGACCUGGaccUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 25014 0.8 0.279034
Target:  5'- uGGACCuggaGGACCUGGAGGACCGc- -3'
miRNA:   3'- -CCUGGuggaCCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 23143 0.8 0.279034
Target:  5'- aGGACCAgUUGGACCUGGAGcACCuggAUCg -3'
miRNA:   3'- -CCUGGUgGACCUGGACCUCcUGG---UAG- -5'
31664 3' -57.7 NC_006883.1 + 21991 0.8 0.279034
Target:  5'- aGGACCuccACUUGGACCaGGAGGACCu-- -3'
miRNA:   3'- -CCUGG---UGGACCUGGaCCUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 23438 0.81 0.237895
Target:  5'- -uAUUACCUGGACCUGGuggaccuguAGGACCAUCu -3'
miRNA:   3'- ccUGGUGGACCUGGACC---------UCCUGGUAG- -5'
31664 3' -57.7 NC_006883.1 + 23299 0.81 0.227111
Target:  5'- uGGACCACCgauACCUGGAGGACCu-- -3'
miRNA:   3'- -CCUGGUGGaccUGGACCUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 27758 0.82 0.211714
Target:  5'- aGGACCAgUUGGACCUGuGGGACCAg- -3'
miRNA:   3'- -CCUGGUgGACCUGGACcUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 26779 0.82 0.211714
Target:  5'- aGGACCAgUUGGACCUGcAGGACCAg- -3'
miRNA:   3'- -CCUGGUgGACCUGGACcUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 23344 0.82 0.211714
Target:  5'- aGGACCAgUUGGACCUGGAGaACCAg- -3'
miRNA:   3'- -CCUGGUgGACCUGGACCUCcUGGUag -5'
31664 3' -57.7 NC_006883.1 + 21919 0.82 0.203875
Target:  5'- uGGACCagcaucaccuugcggACCUugcGGACCUGGAGGACCAc- -3'
miRNA:   3'- -CCUGG---------------UGGA---CCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 223073 0.83 0.166747
Target:  5'- aGGACCAggaGGACCUGGAGGACCAa- -3'
miRNA:   3'- -CCUGGUggaCCUGGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 26554 0.84 0.158849
Target:  5'- aGGACCugCUGGACCUGuAGGACCu-- -3'
miRNA:   3'- -CCUGGugGACCUGGACcUCCUGGuag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.