miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31664 5' -55.2 NC_006883.1 + 5425 0.69 0.908632
Target:  5'- uUGAUGGACCUGccgcacgauuagguGGAUCUGCUa-- -3'
miRNA:   3'- gACUACCUGGACau------------CCUGGACGAccu -5'
31664 5' -55.2 NC_006883.1 + 28459 0.69 0.901946
Target:  5'- ----aGGACCUGgAGGuCCUGgaGGAc -3'
miRNA:   3'- gacuaCCUGGACaUCCuGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 222783 0.69 0.889098
Target:  5'- uCUGGUGGuCCUGUugguccuccAGGuccuccugguCCUGCUGGu -3'
miRNA:   3'- -GACUACCuGGACA---------UCCu---------GGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 207189 0.69 0.889098
Target:  5'- -cGAUGcAUCUGUAGGugUaccugUGCUGGAu -3'
miRNA:   3'- gaCUACcUGGACAUCCugG-----ACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 21783 0.7 0.860836
Target:  5'- ---cUGGACCaGaAGGACCUGgaGGAc -3'
miRNA:   3'- gacuACCUGGaCaUCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 28268 0.7 0.853262
Target:  5'- ---cUGGACCaGUuGGACCUGgaGGAc -3'
miRNA:   3'- gacuACCUGGaCAuCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 23357 0.7 0.853262
Target:  5'- uUGAaGGACCUacAGGACCaGUUGGAc -3'
miRNA:   3'- gACUaCCUGGAcaUCCUGGaCGACCU- -5'
31664 5' -55.2 NC_006883.1 + 26672 0.7 0.845497
Target:  5'- ---cUGGACCUGgAGGACC-GuCUGGAc -3'
miRNA:   3'- gacuACCUGGACaUCCUGGaC-GACCU- -5'
31664 5' -55.2 NC_006883.1 + 22211 0.71 0.829415
Target:  5'- ---cUGGACCUGgAGGACCaGCaGGAc -3'
miRNA:   3'- gacuACCUGGACaUCCUGGaCGaCCU- -5'
31664 5' -55.2 NC_006883.1 + 28099 0.71 0.821113
Target:  5'- -aGuUGGACCUGgAGGACCaGCaGGAc -3'
miRNA:   3'- gaCuACCUGGACaUCCUGGaCGaCCU- -5'
31664 5' -55.2 NC_006883.1 + 21980 0.71 0.821113
Target:  5'- ---uUGGACCaGgAGGACCUGCaGGAc -3'
miRNA:   3'- gacuACCUGGaCaUCCUGGACGaCCU- -5'
31664 5' -55.2 NC_006883.1 + 21740 0.71 0.821113
Target:  5'- -aGuUGGACCUGgAGGACCaGCaGGAc -3'
miRNA:   3'- gaCuACCUGGACaUCCUGGaCGaCCU- -5'
31664 5' -55.2 NC_006883.1 + 22095 0.71 0.821113
Target:  5'- cCUGGaggaccacuUGGACCaGgAGGACCUGgaGGAc -3'
miRNA:   3'- -GACU---------ACCUGGaCaUCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 39876 0.72 0.777288
Target:  5'- -aGGUGGugCUGgugguaauGGugCUGCUGGu -3'
miRNA:   3'- gaCUACCugGACau------CCugGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 22170 0.72 0.768116
Target:  5'- cCUGGaGGACCaccacUAGGACCUGgaGGAc -3'
miRNA:   3'- -GACUaCCUGGac---AUCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 21939 0.74 0.651468
Target:  5'- -gGA-GGACCaGUuGGACCUGUUGGAc -3'
miRNA:   3'- gaCUaCCUGGaCAuCCUGGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 23406 0.74 0.631436
Target:  5'- gUGGUGGACCUGgu---CCUGCUGGu -3'
miRNA:   3'- gACUACCUGGACauccuGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 28126 0.77 0.503664
Target:  5'- -aGuUGGACCUGUAGGuCCUGUaGGAc -3'
miRNA:   3'- gaCuACCUGGACAUCCuGGACGaCCU- -5'
31664 5' -55.2 NC_006883.1 + 28328 0.78 0.430698
Target:  5'- ---cUGGACCUGgAGGACCUGgaGGAc -3'
miRNA:   3'- gacuACCUGGACaUCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 26793 0.78 0.422015
Target:  5'- cCUGGUGGACCaGcAGGACCaGUUGGAc -3'
miRNA:   3'- -GACUACCUGGaCaUCCUGGaCGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.