Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31664 | 5' | -55.2 | NC_006883.1 | + | 22095 | 0.71 | 0.821113 |
Target: 5'- cCUGGaggaccacuUGGACCaGgAGGACCUGgaGGAc -3' miRNA: 3'- -GACU---------ACCUGGaCaUCCUGGACgaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 21740 | 0.71 | 0.821113 |
Target: 5'- -aGuUGGACCUGgAGGACCaGCaGGAc -3' miRNA: 3'- gaCuACCUGGACaUCCUGGaCGaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 21980 | 0.71 | 0.821113 |
Target: 5'- ---uUGGACCaGgAGGACCUGCaGGAc -3' miRNA: 3'- gacuACCUGGaCaUCCUGGACGaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 28099 | 0.71 | 0.821113 |
Target: 5'- -aGuUGGACCUGgAGGACCaGCaGGAc -3' miRNA: 3'- gaCuACCUGGACaUCCUGGaCGaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 22170 | 0.72 | 0.768116 |
Target: 5'- cCUGGaGGACCaccacUAGGACCUGgaGGAc -3' miRNA: 3'- -GACUaCCUGGac---AUCCUGGACgaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 21939 | 0.74 | 0.651468 |
Target: 5'- -gGA-GGACCaGUuGGACCUGUUGGAc -3' miRNA: 3'- gaCUaCCUGGaCAuCCUGGACGACCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 28126 | 0.77 | 0.503664 |
Target: 5'- -aGuUGGACCUGUAGGuCCUGUaGGAc -3' miRNA: 3'- gaCuACCUGGACAUCCuGGACGaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 28328 | 0.78 | 0.430698 |
Target: 5'- ---cUGGACCUGgAGGACCUGgaGGAc -3' miRNA: 3'- gacuACCUGGACaUCCUGGACgaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 28268 | 0.7 | 0.853262 |
Target: 5'- ---cUGGACCaGUuGGACCUGgaGGAc -3' miRNA: 3'- gacuACCUGGaCAuCCUGGACgaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 23357 | 0.7 | 0.853262 |
Target: 5'- uUGAaGGACCUacAGGACCaGUUGGAc -3' miRNA: 3'- gACUaCCUGGAcaUCCUGGaCGACCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 21783 | 0.7 | 0.860836 |
Target: 5'- ---cUGGACCaGaAGGACCUGgaGGAc -3' miRNA: 3'- gacuACCUGGaCaUCCUGGACgaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 26647 | 0.66 | 0.969627 |
Target: 5'- -aGuUGGACCaguuccaccUGUGGGACCaGCaGGAc -3' miRNA: 3'- gaCuACCUGG---------ACAUCCUGGaCGaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 21901 | 0.66 | 0.966637 |
Target: 5'- ----cGGACCUugcGGACCUGgaGGAc -3' miRNA: 3'- gacuaCCUGGAcauCCUGGACgaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 27727 | 0.67 | 0.944292 |
Target: 5'- cCUGugGGACCUGUcGGACCaGUaGGAc -3' miRNA: 3'- -GACuaCCUGGACAuCCUGGaCGaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 23317 | 0.67 | 0.939797 |
Target: 5'- ----aGGACCUugAGGACCaGUUGGAc -3' miRNA: 3'- gacuaCCUGGAcaUCCUGGaCGACCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 223073 | 0.68 | 0.919537 |
Target: 5'- ----aGGACCaGgAGGACCUGgaGGAc -3' miRNA: 3'- gacuaCCUGGaCaUCCUGGACgaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 23245 | 0.68 | 0.9139 |
Target: 5'- ----aGGACCaGUuGGACCUGgaGGAc -3' miRNA: 3'- gacuaCCUGGaCAuCCUGGACgaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 5425 | 0.69 | 0.908632 |
Target: 5'- uUGAUGGACCUGccgcacgauuagguGGAUCUGCUa-- -3' miRNA: 3'- gACUACCUGGACau------------CCUGGACGAccu -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 28459 | 0.69 | 0.901946 |
Target: 5'- ----aGGACCUGgAGGuCCUGgaGGAc -3' miRNA: 3'- gacuaCCUGGACaUCCuGGACgaCCU- -5' |
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31664 | 5' | -55.2 | NC_006883.1 | + | 207189 | 0.69 | 0.889098 |
Target: 5'- -cGAUGcAUCUGUAGGugUaccugUGCUGGAu -3' miRNA: 3'- gaCUACcUGGACAUCCugG-----ACGACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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