miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31664 5' -55.2 NC_006883.1 + 220246 0.79 0.396609
Target:  5'- -gGGUGGugCUGUAGGuaCUGCUGGAa -3'
miRNA:   3'- gaCUACCugGACAUCCugGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 173051 0.66 0.965066
Target:  5'- aCUGGuuuuggugcuauaacUGGACCUGgugcaguaguaacuGGAaCUGCUGGAu -3'
miRNA:   3'- -GACU---------------ACCUGGACau------------CCUgGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 21983 0.67 0.960046
Target:  5'- cCUGcUGGAUCUGcUGGuGcgauACCUGCUGGu -3'
miRNA:   3'- -GACuACCUGGAC-AUC-C----UGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 194091 0.67 0.960046
Target:  5'- aUGGUGGAgCaaugGUugguGGugCUGCUGGu -3'
miRNA:   3'- gACUACCUgGa---CAu---CCugGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 21925 0.67 0.960046
Target:  5'- gUGGUGGuCCUGgu---CCUGCUGGu -3'
miRNA:   3'- gACUACCuGGACauccuGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 22926 0.67 0.958627
Target:  5'- cCUGAUGGuccaagugguccuCCUGguccccuGGuCCUGCUGGu -3'
miRNA:   3'- -GACUACCu------------GGACau-----CCuGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 27945 0.67 0.952608
Target:  5'- aUGGUGGAaCUGguccgacuGGuCCUGCUGGu -3'
miRNA:   3'- gACUACCUgGACau------CCuGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 159167 0.67 0.952608
Target:  5'- gUGGUGGAUaUGUu---CCUGCUGGAu -3'
miRNA:   3'- gACUACCUGgACAuccuGGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 193992 0.67 0.944292
Target:  5'- uUGGUGGugCugcuggugcuacUGUAGGuuuugCUGCUGGAu -3'
miRNA:   3'- gACUACCugG------------ACAUCCug---GACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 112315 0.67 0.944292
Target:  5'- aCUGGUGGAUCUGguGGugCUaCUGGu -3'
miRNA:   3'- -GACUACCUGGACauCCugGAcGACCu -5'
31664 5' -55.2 NC_006883.1 + 15391 0.68 0.930125
Target:  5'- --aGUGGACCUccauUAGGAUgUGCUGGu -3'
miRNA:   3'- gacUACCUGGAc---AUCCUGgACGACCu -5'
31664 5' -55.2 NC_006883.1 + 21577 0.79 0.404968
Target:  5'- gUGGUGGuCCUGguccuacuGGACCUGCUGGu -3'
miRNA:   3'- gACUACCuGGACau------CCUGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 23406 0.74 0.631436
Target:  5'- gUGGUGGACCUGgu---CCUGCUGGu -3'
miRNA:   3'- gACUACCUGGACauccuGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 39876 0.72 0.777288
Target:  5'- -aGGUGGugCUGgugguaauGGugCUGCUGGu -3'
miRNA:   3'- gaCUACCugGACau------CCugGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 222783 0.69 0.889098
Target:  5'- uCUGGUGGuCCUGUugguccuccAGGuccuccugguCCUGCUGGu -3'
miRNA:   3'- -GACUACCuGGACA---------UCCu---------GGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 18854 0.68 0.919537
Target:  5'- uUGAUGGAaaCCacGUAGGugCUGCcuauacUGGAa -3'
miRNA:   3'- gACUACCU--GGa-CAUCCugGACG------ACCU- -5'
31664 5' -55.2 NC_006883.1 + 22890 0.68 0.919537
Target:  5'- cCUGcUGGugCUccagGUuuaacuGGACCUGCUGGu -3'
miRNA:   3'- -GACuACCugGA----CAu-----CCUGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 21448 0.68 0.924946
Target:  5'- gUGGUGGuCCUacuGGuCCUGCUGGu -3'
miRNA:   3'- gACUACCuGGAcauCCuGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 27511 1.09 0.005628
Target:  5'- cCUGAUGGACCUGUAGGACCUGCUGGAc -3'
miRNA:   3'- -GACUACCUGGACAUCCUGGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 26647 0.66 0.969627
Target:  5'- -aGuUGGACCaguuccaccUGUGGGACCaGCaGGAc -3'
miRNA:   3'- gaCuACCUGG---------ACAUCCUGGaCGaCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.