miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31664 5' -55.2 NC_006883.1 + 5425 0.69 0.908632
Target:  5'- uUGAUGGACCUGccgcacgauuagguGGAUCUGCUa-- -3'
miRNA:   3'- gACUACCUGGACau------------CCUGGACGAccu -5'
31664 5' -55.2 NC_006883.1 + 15391 0.68 0.930125
Target:  5'- --aGUGGACCUccauUAGGAUgUGCUGGu -3'
miRNA:   3'- gacUACCUGGAc---AUCCUGgACGACCu -5'
31664 5' -55.2 NC_006883.1 + 18854 0.68 0.919537
Target:  5'- uUGAUGGAaaCCacGUAGGugCUGCcuauacUGGAa -3'
miRNA:   3'- gACUACCU--GGa-CAUCCugGACG------ACCU- -5'
31664 5' -55.2 NC_006883.1 + 21448 0.68 0.924946
Target:  5'- gUGGUGGuCCUacuGGuCCUGCUGGu -3'
miRNA:   3'- gACUACCuGGAcauCCuGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 21577 0.79 0.404968
Target:  5'- gUGGUGGuCCUGguccuacuGGACCUGCUGGu -3'
miRNA:   3'- gACUACCuGGACau------CCUGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 21740 0.71 0.821113
Target:  5'- -aGuUGGACCUGgAGGACCaGCaGGAc -3'
miRNA:   3'- gaCuACCUGGACaUCCUGGaCGaCCU- -5'
31664 5' -55.2 NC_006883.1 + 21783 0.7 0.860836
Target:  5'- ---cUGGACCaGaAGGACCUGgaGGAc -3'
miRNA:   3'- gacuACCUGGaCaUCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 21901 0.66 0.966637
Target:  5'- ----cGGACCUugcGGACCUGgaGGAc -3'
miRNA:   3'- gacuaCCUGGAcauCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 21925 0.67 0.960046
Target:  5'- gUGGUGGuCCUGgu---CCUGCUGGu -3'
miRNA:   3'- gACUACCuGGACauccuGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 21939 0.74 0.651468
Target:  5'- -gGA-GGACCaGUuGGACCUGUUGGAc -3'
miRNA:   3'- gaCUaCCUGGaCAuCCUGGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 21980 0.71 0.821113
Target:  5'- ---uUGGACCaGgAGGACCUGCaGGAc -3'
miRNA:   3'- gacuACCUGGaCaUCCUGGACGaCCU- -5'
31664 5' -55.2 NC_006883.1 + 21983 0.67 0.960046
Target:  5'- cCUGcUGGAUCUGcUGGuGcgauACCUGCUGGu -3'
miRNA:   3'- -GACuACCUGGAC-AUC-C----UGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 22045 0.79 0.404968
Target:  5'- -aGuUGGACCUGUAGGACC-GuCUGGAc -3'
miRNA:   3'- gaCuACCUGGACAUCCUGGaC-GACCU- -5'
31664 5' -55.2 NC_006883.1 + 22095 0.71 0.821113
Target:  5'- cCUGGaggaccacuUGGACCaGgAGGACCUGgaGGAc -3'
miRNA:   3'- -GACU---------ACCUGGaCaUCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 22170 0.72 0.768116
Target:  5'- cCUGGaGGACCaccacUAGGACCUGgaGGAc -3'
miRNA:   3'- -GACUaCCUGGac---AUCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 22211 0.71 0.829415
Target:  5'- ---cUGGACCUGgAGGACCaGCaGGAc -3'
miRNA:   3'- gacuACCUGGACaUCCUGGaCGaCCU- -5'
31664 5' -55.2 NC_006883.1 + 22890 0.68 0.919537
Target:  5'- cCUGcUGGugCUccagGUuuaacuGGACCUGCUGGu -3'
miRNA:   3'- -GACuACCugGA----CAu-----CCUGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 22926 0.67 0.958627
Target:  5'- cCUGAUGGuccaagugguccuCCUGguccccuGGuCCUGCUGGu -3'
miRNA:   3'- -GACUACCu------------GGACau-----CCuGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 23245 0.68 0.9139
Target:  5'- ----aGGACCaGUuGGACCUGgaGGAc -3'
miRNA:   3'- gacuaCCUGGaCAuCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 23317 0.67 0.939797
Target:  5'- ----aGGACCUugAGGACCaGUUGGAc -3'
miRNA:   3'- gacuaCCUGGAcaUCCUGGaCGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.