miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31664 5' -55.2 NC_006883.1 + 27511 1.09 0.005628
Target:  5'- cCUGAUGGACCUGUAGGACCUGCUGGAc -3'
miRNA:   3'- -GACUACCUGGACAUCCUGGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 26550 1 0.019564
Target:  5'- cCUGcUGGACCUGUAGGACCUGCUGGAc -3'
miRNA:   3'- -GACuACCUGGACAUCCUGGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 23922 0.96 0.039322
Target:  5'- -aGuUGGACCUGUAGGACCUGCUGGAc -3'
miRNA:   3'- gaCuACCUGGACAUCCUGGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 23724 0.92 0.06683
Target:  5'- cCUGcUGGACCUGgAGGACCUGCUGGAc -3'
miRNA:   3'- -GACuACCUGGACaUCCUGGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 24965 0.9 0.096319
Target:  5'- cCUGAuggaccacuUGGACCUGUAGGACCUGgaGGAg -3'
miRNA:   3'- -GACU---------ACCUGGACAUCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 27589 0.86 0.148643
Target:  5'- -gGA-GGACCUGgAGGACCUGCUGGAc -3'
miRNA:   3'- gaCUaCCUGGACaUCCUGGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 27661 0.86 0.148643
Target:  5'- -gGA-GGACCUGgAGGACCUGCUGGAc -3'
miRNA:   3'- gaCUaCCUGGACaUCCUGGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 23427 0.86 0.152417
Target:  5'- cCUGGUGGACCUGUAGGACCauCUGGu -3'
miRNA:   3'- -GACUACCUGGACAUCCUGGacGACCu -5'
31664 5' -55.2 NC_006883.1 + 23398 0.84 0.209927
Target:  5'- -aGuUGGACCUGUGGGACCUGUgGGAc -3'
miRNA:   3'- gaCuACCUGGACAUCCUGGACGaCCU- -5'
31664 5' -55.2 NC_006883.1 + 25019 0.83 0.236627
Target:  5'- cCUGuUGGACCUGgAGGACCUGgaGGAc -3'
miRNA:   3'- -GACuACCUGGACaUCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 28560 0.81 0.294465
Target:  5'- cCUGGUGGACCUGgaggAccacuuccaccugaaGGACCUGUUGGAc -3'
miRNA:   3'- -GACUACCUGGACa---U---------------CCUGGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 23695 0.79 0.388363
Target:  5'- -aGAUGGACCUGgAGGACCaGCaGGAc -3'
miRNA:   3'- gaCUACCUGGACaUCCUGGaCGaCCU- -5'
31664 5' -55.2 NC_006883.1 + 220246 0.79 0.396609
Target:  5'- -gGGUGGugCUGUAGGuaCUGCUGGAa -3'
miRNA:   3'- gaCUACCugGACAUCCugGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 22045 0.79 0.404968
Target:  5'- -aGuUGGACCUGUAGGACC-GuCUGGAc -3'
miRNA:   3'- gaCuACCUGGACAUCCUGGaC-GACCU- -5'
31664 5' -55.2 NC_006883.1 + 21577 0.79 0.404968
Target:  5'- gUGGUGGuCCUGguccuacuGGACCUGCUGGu -3'
miRNA:   3'- gACUACCuGGACau------CCUGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 27752 0.78 0.413437
Target:  5'- -aGuUGGACCUGUGGGACCaGUUGGu -3'
miRNA:   3'- gaCuACCUGGACAUCCUGGaCGACCu -5'
31664 5' -55.2 NC_006883.1 + 26793 0.78 0.422015
Target:  5'- cCUGGUGGACCaGcAGGACCaGUUGGAc -3'
miRNA:   3'- -GACUACCUGGaCaUCCUGGaCGACCU- -5'
31664 5' -55.2 NC_006883.1 + 28328 0.78 0.430698
Target:  5'- ---cUGGACCUGgAGGACCUGgaGGAc -3'
miRNA:   3'- gacuACCUGGACaUCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 28126 0.77 0.503664
Target:  5'- -aGuUGGACCUGUAGGuCCUGUaGGAc -3'
miRNA:   3'- gaCuACCUGGACAUCCuGGACGaCCU- -5'
31664 5' -55.2 NC_006883.1 + 23406 0.74 0.631436
Target:  5'- gUGGUGGACCUGgu---CCUGCUGGu -3'
miRNA:   3'- gACUACCUGGACauccuGGACGACCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.