miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31664 5' -55.2 NC_006883.1 + 223073 0.68 0.919537
Target:  5'- ----aGGACCaGgAGGACCUGgaGGAc -3'
miRNA:   3'- gacuaCCUGGaCaUCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 222783 0.69 0.889098
Target:  5'- uCUGGUGGuCCUGUugguccuccAGGuccuccugguCCUGCUGGu -3'
miRNA:   3'- -GACUACCuGGACA---------UCCu---------GGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 220246 0.79 0.396609
Target:  5'- -gGGUGGugCUGUAGGuaCUGCUGGAa -3'
miRNA:   3'- gaCUACCugGACAUCCugGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 207189 0.69 0.889098
Target:  5'- -cGAUGcAUCUGUAGGugUaccugUGCUGGAu -3'
miRNA:   3'- gaCUACcUGGACAUCCugG-----ACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 194091 0.67 0.960046
Target:  5'- aUGGUGGAgCaaugGUugguGGugCUGCUGGu -3'
miRNA:   3'- gACUACCUgGa---CAu---CCugGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 193992 0.67 0.944292
Target:  5'- uUGGUGGugCugcuggugcuacUGUAGGuuuugCUGCUGGAu -3'
miRNA:   3'- gACUACCugG------------ACAUCCug---GACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 173051 0.66 0.965066
Target:  5'- aCUGGuuuuggugcuauaacUGGACCUGgugcaguaguaacuGGAaCUGCUGGAu -3'
miRNA:   3'- -GACU---------------ACCUGGACau------------CCUgGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 159167 0.67 0.952608
Target:  5'- gUGGUGGAUaUGUu---CCUGCUGGAu -3'
miRNA:   3'- gACUACCUGgACAuccuGGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 112315 0.67 0.944292
Target:  5'- aCUGGUGGAUCUGguGGugCUaCUGGu -3'
miRNA:   3'- -GACUACCUGGACauCCugGAcGACCu -5'
31664 5' -55.2 NC_006883.1 + 39876 0.72 0.777288
Target:  5'- -aGGUGGugCUGgugguaauGGugCUGCUGGu -3'
miRNA:   3'- gaCUACCugGACau------CCugGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 28560 0.81 0.294465
Target:  5'- cCUGGUGGACCUGgaggAccacuuccaccugaaGGACCUGUUGGAc -3'
miRNA:   3'- -GACUACCUGGACa---U---------------CCUGGACGACCU- -5'
31664 5' -55.2 NC_006883.1 + 28459 0.69 0.901946
Target:  5'- ----aGGACCUGgAGGuCCUGgaGGAc -3'
miRNA:   3'- gacuaCCUGGACaUCCuGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 28328 0.78 0.430698
Target:  5'- ---cUGGACCUGgAGGACCUGgaGGAc -3'
miRNA:   3'- gacuACCUGGACaUCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 28268 0.7 0.853262
Target:  5'- ---cUGGACCaGUuGGACCUGgaGGAc -3'
miRNA:   3'- gacuACCUGGaCAuCCUGGACgaCCU- -5'
31664 5' -55.2 NC_006883.1 + 28126 0.77 0.503664
Target:  5'- -aGuUGGACCUGUAGGuCCUGUaGGAc -3'
miRNA:   3'- gaCuACCUGGACAUCCuGGACGaCCU- -5'
31664 5' -55.2 NC_006883.1 + 28099 0.71 0.821113
Target:  5'- -aGuUGGACCUGgAGGACCaGCaGGAc -3'
miRNA:   3'- gaCuACCUGGACaUCCUGGaCGaCCU- -5'
31664 5' -55.2 NC_006883.1 + 27945 0.67 0.952608
Target:  5'- aUGGUGGAaCUGguccgacuGGuCCUGCUGGu -3'
miRNA:   3'- gACUACCUgGACau------CCuGGACGACCu -5'
31664 5' -55.2 NC_006883.1 + 27752 0.78 0.413437
Target:  5'- -aGuUGGACCUGUGGGACCaGUUGGu -3'
miRNA:   3'- gaCuACCUGGACAUCCUGGaCGACCu -5'
31664 5' -55.2 NC_006883.1 + 27727 0.67 0.944292
Target:  5'- cCUGugGGACCUGUcGGACCaGUaGGAc -3'
miRNA:   3'- -GACuaCCUGGACAuCCUGGaCGaCCU- -5'
31664 5' -55.2 NC_006883.1 + 27661 0.86 0.148643
Target:  5'- -gGA-GGACCUGgAGGACCUGCUGGAc -3'
miRNA:   3'- gaCUaCCUGGACaUCCUGGACGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.