miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31666 3' -54.8 NC_006883.1 + 28173 1.08 0.006515
Target:  5'- cCAGCAGGACCAGUUGGACCAGUUCCAc -3'
miRNA:   3'- -GUCGUCCUGGUCAACCUGGUCAAGGU- -5'
31666 3' -54.8 NC_006883.1 + 28296 1.03 0.013601
Target:  5'- cCAGUAGGACCAGUUGGACCAGUUCCGc -3'
miRNA:   3'- -GUCGUCCUGGUCAACCUGGUCAAGGU- -5'
31666 3' -54.8 NC_006883.1 + 28227 1.01 0.019896
Target:  5'- cCAGCAGGACCAGUcGGACCAGUUCCAc -3'
miRNA:   3'- -GUCGUCCUGGUCAaCCUGGUCAAGGU- -5'
31666 3' -54.8 NC_006883.1 + 22011 0.98 0.028287
Target:  5'- cCAGCAGGACCAGUUGGACCAGgaccUCCAc -3'
miRNA:   3'- -GUCGUCCUGGUCAACCUGGUCa---AGGU- -5'
31666 3' -54.8 NC_006883.1 + 222985 0.95 0.042354
Target:  5'- cCAGCAGGACCAGgugaaccuugUGGACCAGUUCCAc -3'
miRNA:   3'- -GUCGUCCUGGUCa---------ACCUGGUCAAGGU- -5'
31666 3' -54.8 NC_006883.1 + 26622 0.92 0.066625
Target:  5'- cCAGCAGGACCAGUUGGACCuGUUgCAc -3'
miRNA:   3'- -GUCGUCCUGGUCAACCUGGuCAAgGU- -5'
31666 3' -54.8 NC_006883.1 + 27763 0.91 0.078052
Target:  5'- cCAGCAGGACCAGUUGGACCuGUgggaCCAg -3'
miRNA:   3'- -GUCGUCCUGGUCAACCUGGuCAa---GGU- -5'
31666 3' -54.8 NC_006883.1 + 26811 0.91 0.082262
Target:  5'- cCAGCAGGACCAGUUGGACCuGGUggaCCAg -3'
miRNA:   3'- -GUCGUCCUGGUCAACCUGG-UCAa--GGU- -5'
31666 3' -54.8 NC_006883.1 + 28515 0.89 0.104028
Target:  5'- cCAGUuGGACCAGUcGGACCAGUUCCAc -3'
miRNA:   3'- -GUCGuCCUGGUCAaCCUGGUCAAGGU- -5'
31666 3' -54.8 NC_006883.1 + 23250 0.89 0.109554
Target:  5'- cCAGCAGGACCAGUUGGACCuggAGgaCCAc -3'
miRNA:   3'- -GUCGUCCUGGUCAACCUGG---UCaaGGU- -5'
31666 3' -54.8 NC_006883.1 + 26657 0.89 0.112419
Target:  5'- -cGUcuGGACCAGUUGGACCAGUUCCAc -3'
miRNA:   3'- guCGu-CCUGGUCAACCUGGUCAAGGU- -5'
31666 3' -54.8 NC_006883.1 + 22056 0.88 0.127823
Target:  5'- cCAGCAGGACCAGUUGGACCuguAGgaCCGu -3'
miRNA:   3'- -GUCGUCCUGGUCAACCUGG---UCaaGGU- -5'
31666 3' -54.8 NC_006883.1 + 26783 0.86 0.156567
Target:  5'- nAGCAGGACCAGUUGGACCugcAGgaCCAg -3'
miRNA:   3'- gUCGUCCUGGUCAACCUGG---UCaaGGU- -5'
31666 3' -54.8 NC_006883.1 + 23220 0.86 0.168779
Target:  5'- cCAGCAGGACCAGgaGGACCAGgaggaCCAc -3'
miRNA:   3'- -GUCGUCCUGGUCaaCCUGGUCaa---GGU- -5'
31666 3' -54.8 NC_006883.1 + 21876 0.85 0.191034
Target:  5'- cCAGCAGGACCAGa-GGACCAGcaggUCCAg -3'
miRNA:   3'- -GUCGUCCUGGUCaaCCUGGUCa---AGGU- -5'
31666 3' -54.8 NC_006883.1 + 23148 0.85 0.195783
Target:  5'- cCAGCAGGACCAGUUGGACCuGgagcaCCu -3'
miRNA:   3'- -GUCGUCCUGGUCAACCUGGuCaa---GGu -5'
31666 3' -54.8 NC_006883.1 + 23942 0.84 0.215822
Target:  5'- cCAGUcGGACCAGUUGGACCAGUUggaCCu -3'
miRNA:   3'- -GUCGuCCUGGUCAACCUGGUCAA---GGu -5'
31666 3' -54.8 NC_006883.1 + 222949 0.83 0.237594
Target:  5'- cCAGCAGGACCAGcaGGACCAGgagaaCCAg -3'
miRNA:   3'- -GUCGUCCUGGUCaaCCUGGUCaa---GGU- -5'
31666 3' -54.8 NC_006883.1 + 21942 0.83 0.243317
Target:  5'- cCAGgAGGACCAGUUGGACCuGUUggaCCAg -3'
miRNA:   3'- -GUCgUCCUGGUCAACCUGGuCAA---GGU- -5'
31666 3' -54.8 NC_006883.1 + 21724 0.83 0.255106
Target:  5'- cCAGCAGGACCAGUaGGACCAccaccguUUCCAc -3'
miRNA:   3'- -GUCGUCCUGGUCAaCCUGGUc------AAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.