miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31666 3' -54.8 NC_006883.1 + 21724 0.83 0.255106
Target:  5'- cCAGCAGGACCAGUaGGACCAccaccguUUCCAc -3'
miRNA:   3'- -GUCGUCCUGGUCAaCCUGGUc------AAGGU- -5'
31666 3' -54.8 NC_006883.1 + 21767 0.75 0.625857
Target:  5'- -uGgAGGACCAGaaGGACCAGUuauUCCAg -3'
miRNA:   3'- guCgUCCUGGUCaaCCUGGUCA---AGGU- -5'
31666 3' -54.8 NC_006883.1 + 21805 0.76 0.57568
Target:  5'- cCAGCAGGACCAGgaccgccaccUGGACCAGa---- -3'
miRNA:   3'- -GUCGUCCUGGUCa---------ACCUGGUCaaggu -5'
31666 3' -54.8 NC_006883.1 + 21876 0.85 0.191034
Target:  5'- cCAGCAGGACCAGa-GGACCAGcaggUCCAg -3'
miRNA:   3'- -GUCGUCCUGGUCaaCCUGGUCa---AGGU- -5'
31666 3' -54.8 NC_006883.1 + 21942 0.83 0.243317
Target:  5'- cCAGgAGGACCAGUUGGACCuGUUggaCCAg -3'
miRNA:   3'- -GUCgUCCUGGUCAACCUGGuCAA---GGU- -5'
31666 3' -54.8 NC_006883.1 + 21975 0.72 0.782149
Target:  5'- cCAGgAGGACCuGcaGGACCAGgagaUCCAg -3'
miRNA:   3'- -GUCgUCCUGGuCaaCCUGGUCa---AGGU- -5'
31666 3' -54.8 NC_006883.1 + 22011 0.98 0.028287
Target:  5'- cCAGCAGGACCAGUUGGACCAGgaccUCCAc -3'
miRNA:   3'- -GUCGUCCUGGUCAACCUGGUCa---AGGU- -5'
31666 3' -54.8 NC_006883.1 + 22056 0.88 0.127823
Target:  5'- cCAGCAGGACCAGUUGGACCuguAGgaCCGu -3'
miRNA:   3'- -GUCGUCCUGGUCAACCUGG---UCaaGGU- -5'
31666 3' -54.8 NC_006883.1 + 22093 0.67 0.962438
Target:  5'- -uGgAGGACCAcUUGGACCAGgaggaCCu -3'
miRNA:   3'- guCgUCCUGGUcAACCUGGUCaa---GGu -5'
31666 3' -54.8 NC_006883.1 + 22147 0.66 0.979101
Target:  5'- -uGgAGGACCAGgugaaccacUUGGACCAGcaggaCCAu -3'
miRNA:   3'- guCgUCCUGGUC---------AACCUGGUCaa---GGU- -5'
31666 3' -54.8 NC_006883.1 + 22204 0.73 0.735222
Target:  5'- -uGgAGGACCAGcaGGACCAGgaCCAc -3'
miRNA:   3'- guCgUCCUGGUCaaCCUGGUCaaGGU- -5'
31666 3' -54.8 NC_006883.1 + 22242 0.81 0.335782
Target:  5'- cCAGCAGGACCAGgaGGACCAcuuGgaCCAu -3'
miRNA:   3'- -GUCGUCCUGGUCaaCCUGGU---CaaGGU- -5'
31666 3' -54.8 NC_006883.1 + 23148 0.85 0.195783
Target:  5'- cCAGCAGGACCAGUUGGACCuGgagcaCCu -3'
miRNA:   3'- -GUCGUCCUGGUCAACCUGGuCaa---GGu -5'
31666 3' -54.8 NC_006883.1 + 23220 0.86 0.168779
Target:  5'- cCAGCAGGACCAGgaGGACCAGgaggaCCAc -3'
miRNA:   3'- -GUCGUCCUGGUCaaCCUGGUCaa---GGU- -5'
31666 3' -54.8 NC_006883.1 + 23250 0.89 0.109554
Target:  5'- cCAGCAGGACCAGUUGGACCuggAGgaCCAc -3'
miRNA:   3'- -GUCGUCCUGGUCAACCUGG---UCaaGGU- -5'
31666 3' -54.8 NC_006883.1 + 23322 0.78 0.460484
Target:  5'- cCAGCAGGACCuugaGGACCAGUUggaCCAc -3'
miRNA:   3'- -GUCGUCCUGGucaaCCUGGUCAA---GGU- -5'
31666 3' -54.8 NC_006883.1 + 23346 0.71 0.834072
Target:  5'- --aCAGGACCAGUUGGACCuGg---- -3'
miRNA:   3'- gucGUCCUGGUCAACCUGGuCaaggu -5'
31666 3' -54.8 NC_006883.1 + 23380 0.71 0.800067
Target:  5'- -uGUGGGACCAGUUGGACCuggauuugaAGgaCCu -3'
miRNA:   3'- guCGUCCUGGUCAACCUGG---------UCaaGGu -5'
31666 3' -54.8 NC_006883.1 + 23425 0.66 0.974314
Target:  5'- -uGguGGACCuGUaGGACCAucuggUCCAg -3'
miRNA:   3'- guCguCCUGGuCAaCCUGGUca---AGGU- -5'
31666 3' -54.8 NC_006883.1 + 23686 0.75 0.635935
Target:  5'- -uGgAGGACCAGcaGGACCAGgUCCAc -3'
miRNA:   3'- guCgUCCUGGUCaaCCUGGUCaAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.