miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31666 5' -52.8 NC_006883.1 + 28139 1.1 0.008219
Target:  5'- gACCAGUUGGACCAGUUGGACCUGUAGg -3'
miRNA:   3'- -UGGUCAACCUGGUCAACCUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 23935 1.1 0.008219
Target:  5'- gACCAGUUGGACCAGUUGGACCUGUAGg -3'
miRNA:   3'- -UGGUCAACCUGGUCAACCUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 22058 0.97 0.048648
Target:  5'- cACCAGcaGGACCAGUUGGACCUGUAGg -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 27764 0.93 0.085316
Target:  5'- uCCAGcaGGACCAGUUGGACCUGUGGg -3'
miRNA:   3'- uGGUCaaCCUGGUCAACCUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 21944 0.92 0.099932
Target:  5'- uACCAGgaGGACCAGUUGGACCUGuUGGa -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGAC-AUC- -5'
31666 5' -52.8 NC_006883.1 + 28280 0.91 0.119962
Target:  5'- gACCAGUuccgccUGGACCAGUUGGACCUGgAGg -3'
miRNA:   3'- -UGGUCA------ACCUGGUCAACCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 23401 0.9 0.129644
Target:  5'- uCCAGUUGGACCuGUgGGACCUGUGGg -3'
miRNA:   3'- uGGUCAACCUGGuCAaCCUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 26651 0.9 0.143677
Target:  5'- gACCAGUUGGACCAGUUccACCUGUGGg -3'
miRNA:   3'- -UGGUCAACCUGGUCAAccUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 26813 0.89 0.147396
Target:  5'- gACCAGcaGGACCAGUUGGACCUGgUGGa -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGAC-AUC- -5'
31666 5' -52.8 NC_006883.1 + 26624 0.89 0.151203
Target:  5'- gACCAGcaGGACCAGUUGGACCUGUu- -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGACAuc -5'
31666 5' -52.8 NC_006883.1 + 26786 0.89 0.159085
Target:  5'- gACCAGcaGGACCAGUUGGACCUGcAGg -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 23252 0.89 0.163164
Target:  5'- cACCAGcaGGACCAGUUGGACCUGgAGg -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 23150 0.88 0.184996
Target:  5'- cACCAGcaGGACCAGUUGGACCUGg-- -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGACauc -5'
31666 5' -52.8 NC_006883.1 + 28526 0.85 0.248089
Target:  5'- gACCuGUUGGACCAGUUGGACCaGUcGGa -3'
miRNA:   3'- -UGGuCAACCUGGUCAACCUGGaCA-UC- -5'
31666 5' -52.8 NC_006883.1 + 24967 0.83 0.335423
Target:  5'- gACCuGaUGGACCAcUUGGACCUGUAGg -3'
miRNA:   3'- -UGGuCaACCUGGUcAACCUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 28111 0.82 0.366462
Target:  5'- uCCuGUaGGACCAGUUGGACCUGgAGg -3'
miRNA:   3'- uGGuCAaCCUGGUCAACCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 26560 0.82 0.382707
Target:  5'- uCCAGgaGGACCuGcUGGACCUGUAGg -3'
miRNA:   3'- uGGUCaaCCUGGuCaACCUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 22088 0.81 0.434221
Target:  5'- gACCAcUUGGACCAGgaGGACCUGgAGg -3'
miRNA:   3'- -UGGUcAACCUGGUCaaCCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 28175 0.8 0.452266
Target:  5'- cACCAGcaGGACCAGUUGGACCaGUu- -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGaCAuc -5'
31666 5' -52.8 NC_006883.1 + 22013 0.8 0.461441
Target:  5'- gACCAGcaGGACCAGUUGGACCa---- -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGacauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.