miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31666 5' -52.8 NC_006883.1 + 21726 0.72 0.854089
Target:  5'- gACCAGcaGGACCAGUaGGACCa---- -3'
miRNA:   3'- -UGGUCaaCCUGGUCAaCCUGGacauc -5'
31666 5' -52.8 NC_006883.1 + 21753 0.78 0.557879
Target:  5'- gACCAGUUauuCCAGUUGGACCUGgAGg -3'
miRNA:   3'- -UGGUCAAccuGGUCAACCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 21789 0.74 0.776956
Target:  5'- cGCCAccUGGACCAGaaGGACCUGgAGg -3'
miRNA:   3'- -UGGUcaACCUGGUCaaCCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 21869 0.66 0.990595
Target:  5'- gACCAGa-GGACCAGcaGGuCCaGUAGg -3'
miRNA:   3'- -UGGUCaaCCUGGUCaaCCuGGaCAUC- -5'
31666 5' -52.8 NC_006883.1 + 21944 0.92 0.099932
Target:  5'- uACCAGgaGGACCAGUUGGACCUGuUGGa -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGAC-AUC- -5'
31666 5' -52.8 NC_006883.1 + 21985 0.77 0.618483
Target:  5'- uCCAcUUGGACCAGgaGGACCUGcAGg -3'
miRNA:   3'- uGGUcAACCUGGUCaaCCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 22013 0.8 0.461441
Target:  5'- gACCAGcaGGACCAGUUGGACCa---- -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGacauc -5'
31666 5' -52.8 NC_006883.1 + 22058 0.97 0.048648
Target:  5'- cACCAGcaGGACCAGUUGGACCUGUAGg -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 22088 0.81 0.434221
Target:  5'- gACCAcUUGGACCAGgaGGACCUGgAGg -3'
miRNA:   3'- -UGGUcAACCUGGUCaaCCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 22133 0.69 0.964838
Target:  5'- aACCAcUUGGACCAGcaGGACCa---- -3'
miRNA:   3'- -UGGUcAACCUGGUCaaCCUGGacauc -5'
31666 5' -52.8 NC_006883.1 + 22199 0.71 0.914182
Target:  5'- gACCAGcaGGACCAGgaccaccacuaGGACCUGgAGg -3'
miRNA:   3'- -UGGUCaaCCUGGUCaa---------CCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 22226 0.76 0.679431
Target:  5'- gACCAcUUGGACCAucUGGACCUGgAGg -3'
miRNA:   3'- -UGGUcAACCUGGUcaACCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 23150 0.88 0.184996
Target:  5'- cACCAGcaGGACCAGUUGGACCUGg-- -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGACauc -5'
31666 5' -52.8 NC_006883.1 + 23213 0.75 0.758189
Target:  5'- gACCAGgaGGACCAGgaGGACCa---- -3'
miRNA:   3'- -UGGUCaaCCUGGUCaaCCUGGacauc -5'
31666 5' -52.8 NC_006883.1 + 23252 0.89 0.163164
Target:  5'- cACCAGcaGGACCAGUUGGACCUGgAGg -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 23306 0.73 0.812883
Target:  5'- gACCAGUUGGACCAccgauaccuGgaGGACCUugAGg -3'
miRNA:   3'- -UGGUCAACCUGGU---------CaaCCUGGAcaUC- -5'
31666 5' -52.8 NC_006883.1 + 23351 0.8 0.480078
Target:  5'- gACCuacaGGACCAGUUGGACCUGgAGa -3'
miRNA:   3'- -UGGucaaCCUGGUCAACCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 23377 0.74 0.767632
Target:  5'- ------nGGACCAGUUGGACCUGg-- -3'
miRNA:   3'- uggucaaCCUGGUCAACCUGGACauc -5'
31666 5' -52.8 NC_006883.1 + 23401 0.9 0.129644
Target:  5'- uCCAGUUGGACCuGUgGGACCUGUGGg -3'
miRNA:   3'- uGGUCAACCUGGuCAaCCUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 23435 0.74 0.776956
Target:  5'- uACC---UGGACCuGgUGGACCUGUAGg -3'
miRNA:   3'- -UGGucaACCUGGuCaACCUGGACAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.