miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31666 5' -52.8 NC_006883.1 + 23708 0.78 0.58804
Target:  5'- gACCuGcUGGACCAGaUGGACCUGgAGg -3'
miRNA:   3'- -UGGuCaACCUGGUCaACCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 23734 0.72 0.861761
Target:  5'- uCCAGgaGGACCuGcUGGACCUGg-- -3'
miRNA:   3'- uGGUCaaCCUGGuCaACCUGGACauc -5'
31666 5' -52.8 NC_006883.1 + 23935 1.1 0.008219
Target:  5'- gACCAGUUGGACCAGUUGGACCUGUAGg -3'
miRNA:   3'- -UGGUCAACCUGGUCAACCUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 24967 0.83 0.335423
Target:  5'- gACCuGaUGGACCAcUUGGACCUGUAGg -3'
miRNA:   3'- -UGGuCaACCUGGUcAACCUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 25024 0.74 0.776956
Target:  5'- aACCuccuGUUGGACCuGgaGGACCUGgAGg -3'
miRNA:   3'- -UGGu---CAACCUGGuCaaCCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 26560 0.82 0.382707
Target:  5'- uCCAGgaGGACCuGcUGGACCUGUAGg -3'
miRNA:   3'- uGGUCaaCCUGGuCaACCUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 26624 0.89 0.151203
Target:  5'- gACCAGcaGGACCAGUUGGACCUGUu- -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGACAuc -5'
31666 5' -52.8 NC_006883.1 + 26651 0.9 0.143677
Target:  5'- gACCAGUUGGACCAGUUccACCUGUGGg -3'
miRNA:   3'- -UGGUCAACCUGGUCAAccUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 26687 0.67 0.989317
Target:  5'- uACCAGUUccACCAccUGGACCUGgAGg -3'
miRNA:   3'- -UGGUCAAccUGGUcaACCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 26713 0.72 0.861761
Target:  5'- uCCAGgaGGACCuGcUGGACCUGg-- -3'
miRNA:   3'- uGGUCaaCCUGGuCaACCUGGACauc -5'
31666 5' -52.8 NC_006883.1 + 26759 0.67 0.98281
Target:  5'- gACCAGUUGcACCAGcaGGACCa---- -3'
miRNA:   3'- -UGGUCAACcUGGUCaaCCUGGacauc -5'
31666 5' -52.8 NC_006883.1 + 26786 0.89 0.159085
Target:  5'- gACCAGcaGGACCAGUUGGACCUGcAGg -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 26813 0.89 0.147396
Target:  5'- gACCAGcaGGACCAGUUGGACCUGgUGGa -3'
miRNA:   3'- -UGGUCaaCCUGGUCAACCUGGAC-AUC- -5'
31666 5' -52.8 NC_006883.1 + 27504 0.79 0.5087
Target:  5'- gACCuGUaGGACCuGcUGGACCUGUAGg -3'
miRNA:   3'- -UGGuCAaCCUGGuCaACCUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 27558 0.72 0.883524
Target:  5'- cACCAccUGGACCAccUGGACCUGgAGg -3'
miRNA:   3'- -UGGUcaACCUGGUcaACCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 27593 0.73 0.838155
Target:  5'- uCCAGgaGGACCuGgaGGACCUGcUGGa -3'
miRNA:   3'- uGGUCaaCCUGGuCaaCCUGGAC-AUC- -5'
31666 5' -52.8 NC_006883.1 + 27665 0.73 0.838155
Target:  5'- uCCAGgaGGACCuGgaGGACCUGcUGGa -3'
miRNA:   3'- uGGUCaaCCUGGuCaaCCUGGAC-AUC- -5'
31666 5' -52.8 NC_006883.1 + 27738 0.78 0.557879
Target:  5'- gACCAGUUGGuCCuGUgGGACCUGUcGGa -3'
miRNA:   3'- -UGGUCAACCuGGuCAaCCUGGACA-UC- -5'
31666 5' -52.8 NC_006883.1 + 27764 0.93 0.085316
Target:  5'- uCCAGcaGGACCAGUUGGACCUGUGGg -3'
miRNA:   3'- uGGUCaaCCUGGUCAACCUGGACAUC- -5'
31666 5' -52.8 NC_006883.1 + 28111 0.82 0.366462
Target:  5'- uCCuGUaGGACCAGUUGGACCUGgAGg -3'
miRNA:   3'- uGGuCAaCCUGGUCAACCUGGACaUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.