Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31666 | 5' | -52.8 | NC_006883.1 | + | 231982 | 0.69 | 0.961474 |
Target: 5'- uCCAGUUGGAguuggaaCAGgauuUGGACCUGg-- -3' miRNA: 3'- uGGUCAACCUg------GUCa---ACCUGGACauc -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 223080 | 0.8 | 0.480078 |
Target: 5'- cACCAGcaGGACCAGgaGGACCUGgAGg -3' miRNA: 3'- -UGGUCaaCCUGGUCaaCCUGGACaUC- -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 223041 | 0.72 | 0.883524 |
Target: 5'- cACCAGaaGGACCAGUaGGACCa---- -3' miRNA: 3'- -UGGUCaaCCUGGUCAaCCUGGacauc -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 222987 | 0.68 | 0.967991 |
Target: 5'- aACCAGcaGGACCAGgUGaACCUuGUGGa -3' miRNA: 3'- -UGGUCaaCCUGGUCaACcUGGA-CAUC- -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 222951 | 0.68 | 0.976239 |
Target: 5'- cACCAGcaGGACCAGcaGGACCa---- -3' miRNA: 3'- -UGGUCaaCCUGGUCaaCCUGGacauc -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 222924 | 0.8 | 0.489534 |
Target: 5'- aACCAGUaGGACCAGcaGGACCaGUAGu -3' miRNA: 3'- -UGGUCAaCCUGGUCaaCCUGGaCAUC- -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 218574 | 0.71 | 0.890344 |
Target: 5'- uCCAGUUGGAauuuauacugcuCCAGUUGGAUauaGUGGu -3' miRNA: 3'- uGGUCAACCU------------GGUCAACCUGga-CAUC- -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 210944 | 0.68 | 0.978606 |
Target: 5'- gACCAGaaucuacaagUGGACCAGUUGG-CCa---- -3' miRNA: 3'- -UGGUCa---------ACCUGGUCAACCuGGacauc -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 28526 | 0.85 | 0.248089 |
Target: 5'- gACCuGUUGGACCAGUUGGACCaGUcGGa -3' miRNA: 3'- -UGGuCAACCUGGUCAACCUGGaCA-UC- -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 28499 | 0.73 | 0.812883 |
Target: 5'- gACCAGUuccaccUGGACCAGgaGGACCa---- -3' miRNA: 3'- -UGGUCA------ACCUGGUCaaCCUGGacauc -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 28466 | 0.69 | 0.964838 |
Target: 5'- cACCAGUaGGACCuGgaGGuCCUGgAGg -3' miRNA: 3'- -UGGUCAaCCUGGuCaaCCuGGACaUC- -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 28349 | 0.79 | 0.528175 |
Target: 5'- gACCAGcaGGACCAGUuccgccUGGACCUGgAGg -3' miRNA: 3'- -UGGUCaaCCUGGUCA------ACCUGGACaUC- -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 28280 | 0.91 | 0.119962 |
Target: 5'- gACCAGUuccgccUGGACCAGUUGGACCUGgAGg -3' miRNA: 3'- -UGGUCA------ACCUGGUCAACCUGGACaUC- -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 28229 | 0.73 | 0.838155 |
Target: 5'- gACCAGcaGGACCAGUcGGACCaGUu- -3' miRNA: 3'- -UGGUCaaCCUGGUCAaCCUGGaCAuc -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 28175 | 0.8 | 0.452266 |
Target: 5'- cACCAGcaGGACCAGUUGGACCaGUu- -3' miRNA: 3'- -UGGUCaaCCUGGUCAACCUGGaCAuc -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 28139 | 1.1 | 0.008219 |
Target: 5'- gACCAGUUGGACCAGUUGGACCUGUAGg -3' miRNA: 3'- -UGGUCAACCUGGUCAACCUGGACAUC- -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 28111 | 0.82 | 0.366462 |
Target: 5'- uCCuGUaGGACCAGUUGGACCUGgAGg -3' miRNA: 3'- uGGuCAaCCUGGUCAACCUGGACaUC- -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 27764 | 0.93 | 0.085316 |
Target: 5'- uCCAGcaGGACCAGUUGGACCUGUGGg -3' miRNA: 3'- uGGUCaaCCUGGUCAACCUGGACAUC- -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 27738 | 0.78 | 0.557879 |
Target: 5'- gACCAGUUGGuCCuGUgGGACCUGUcGGa -3' miRNA: 3'- -UGGUCAACCuGGuCAaCCUGGACA-UC- -5' |
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31666 | 5' | -52.8 | NC_006883.1 | + | 27665 | 0.73 | 0.838155 |
Target: 5'- uCCAGgaGGACCuGgaGGACCUGcUGGa -3' miRNA: 3'- uGGUCaaCCUGGuCaaCCUGGAC-AUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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