miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31667 3' -57.7 NC_006883.1 + 28273 1.12 0.002621
Target:  5'- uCCGCCUGGACCAGUUGGACCUGGAGGa -3'
miRNA:   3'- -GGCGGACCUGGUCAACCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 28333 0.97 0.02483
Target:  5'- uCCGCCUGGACCuGgaGGACCUGGAGGa -3'
miRNA:   3'- -GGCGGACCUGGuCaaCCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 21791 0.92 0.053807
Target:  5'- aCCGCCaccUGGACCAGaaGGACCUGGAGGa -3'
miRNA:   3'- -GGCGG---ACCUGGUCaaCCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 23251 0.92 0.055199
Target:  5'- aCCaGCa-GGACCAGUUGGACCUGGAGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 28110 0.91 0.062701
Target:  5'- cCUGUa-GGACCAGUUGGACCUGGAGGa -3'
miRNA:   3'- -GGCGgaCCUGGUCAACCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 22087 0.89 0.080765
Target:  5'- aCCaCUUGGACCAGgaGGACCUGGAGGa -3'
miRNA:   3'- -GGcGGACCUGGUCaaCCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 23706 0.89 0.082824
Target:  5'- cCUG-CUGGACCAGaUGGACCUGGAGGa -3'
miRNA:   3'- -GGCgGACCUGGUCaACCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 27557 0.89 0.087093
Target:  5'- aCCaCCUGGACCAccUGGACCUGGAGGa -3'
miRNA:   3'- -GGcGGACCUGGUcaACCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 23350 0.86 0.120345
Target:  5'- aCCuaCaGGACCAGUUGGACCUGGAGa -3'
miRNA:   3'- -GGcgGaCCUGGUCAACCUGGACCUCc -5'
31667 3' -57.7 NC_006883.1 + 23149 0.85 0.139397
Target:  5'- aCCaGCa-GGACCAGUUGGACCUGGAGc -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGACCUCc -5'
31667 3' -57.7 NC_006883.1 + 26812 0.85 0.14283
Target:  5'- aCCaGCa-GGACCAGUUGGACCUGGuGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGACCuCC- -5'
31667 3' -57.7 NC_006883.1 + 22225 0.85 0.149929
Target:  5'- aCCaCUUGGACCAucUGGACCUGGAGGa -3'
miRNA:   3'- -GGcGGACCUGGUcaACCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 26659 0.84 0.157347
Target:  5'- aCCGUCUGGACCAGUUGGACCaguuccaccugUGGGa- -3'
miRNA:   3'- -GGCGGACCUGGUCAACCUGG-----------ACCUcc -5'
31667 3' -57.7 NC_006883.1 + 223079 0.84 0.177361
Target:  5'- aCCaGCa-GGACCAGgaGGACCUGGAGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCaaCCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 24957 0.83 0.181626
Target:  5'- aCCaCUUGGACCuGUaGGACCUGGAGGa -3'
miRNA:   3'- -GGcGGACCUGGuCAaCCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 23382 0.81 0.245766
Target:  5'- cCUGUg-GGACCAGUUGGACCUGGAu- -3'
miRNA:   3'- -GGCGgaCCUGGUCAACCUGGACCUcc -5'
31667 3' -57.7 NC_006883.1 + 22057 0.8 0.287525
Target:  5'- aCCaGCa-GGACCAGUUGGACCUGuAGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 26785 0.8 0.287525
Target:  5'- aCCaGCa-GGACCAGUUGGACCUGcAGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 27764 0.79 0.313798
Target:  5'- uCCaGCa-GGACCAGUUGGACCUGuGGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 23934 0.79 0.320644
Target:  5'- aCCagUUGGACCAGUUGGACCUGuAGGa -3'
miRNA:   3'- -GGcgGACCUGGUCAACCUGGACcUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.