miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31667 3' -57.7 NC_006883.1 + 21755 0.76 0.43639
Target:  5'- -----aGGACCAGUuauuccaguUGGACCUGGAGGa -3'
miRNA:   3'- ggcggaCCUGGUCA---------ACCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 21791 0.92 0.053807
Target:  5'- aCCGCCaccUGGACCAGaaGGACCUGGAGGa -3'
miRNA:   3'- -GGCGG---ACCUGGUCaaCCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 21910 0.7 0.771602
Target:  5'- aUCaCCUugcGGACCuugcGGACCUGGAGGa -3'
miRNA:   3'- -GGcGGA---CCUGGucaaCCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 21937 0.72 0.659488
Target:  5'- -----aGGACCAGUUGGACCUGuuGGa -3'
miRNA:   3'- ggcggaCCUGGUCAACCUGGACcuCC- -5'
31667 3' -57.7 NC_006883.1 + 21985 0.77 0.427946
Target:  5'- uCCaCUUGGACCAGgaGGACCUGcAGGa -3'
miRNA:   3'- -GGcGGACCUGGUCaaCCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 22012 0.74 0.591925
Target:  5'- aCCaGCa-GGACCAGUUGGACCaGGAc- -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGaCCUcc -5'
31667 3' -57.7 NC_006883.1 + 22057 0.8 0.287525
Target:  5'- aCCaGCa-GGACCAGUUGGACCUGuAGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 22087 0.89 0.080765
Target:  5'- aCCaCUUGGACCAGgaGGACCUGGAGGa -3'
miRNA:   3'- -GGcGGACCUGGUCaaCCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 22132 0.69 0.845974
Target:  5'- aCCaCUUGGACCAGcaggaccaUcuccaccacucGGACCUGGAGGn -3'
miRNA:   3'- -GGcGGACCUGGUCa-------A-----------CCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 22198 0.75 0.505311
Target:  5'- aCCaGCa-GGACCAGgaccaccacuaGGACCUGGAGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCaa---------CCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 22225 0.85 0.149929
Target:  5'- aCCaCUUGGACCAucUGGACCUGGAGGa -3'
miRNA:   3'- -GGcGGACCUGGUcaACCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 23149 0.85 0.139397
Target:  5'- aCCaGCa-GGACCAGUUGGACCUGGAGc -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGACCUCc -5'
31667 3' -57.7 NC_006883.1 + 23221 0.76 0.479987
Target:  5'- aCCaGCa-GGACCAGgaGGACCaGGAGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCaaCCUGGaCCUCC- -5'
31667 3' -57.7 NC_006883.1 + 23251 0.92 0.055199
Target:  5'- aCCaGCa-GGACCAGUUGGACCUGGAGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 23314 0.77 0.395163
Target:  5'- aCCuUgaGGACCAGUUGGACCaccgauaccUGGAGGa -3'
miRNA:   3'- -GGcGgaCCUGGUCAACCUGG---------ACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 23350 0.86 0.120345
Target:  5'- aCCuaCaGGACCAGUUGGACCUGGAGa -3'
miRNA:   3'- -GGcgGaCCUGGUCAACCUGGACCUCc -5'
31667 3' -57.7 NC_006883.1 + 23382 0.81 0.245766
Target:  5'- cCUGUg-GGACCAGUUGGACCUGGAu- -3'
miRNA:   3'- -GGCGgaCCUGGUCAACCUGGACCUcc -5'
31667 3' -57.7 NC_006883.1 + 23410 0.78 0.349139
Target:  5'- aCCaUCUGGuCCAGUUGGACCUGuGGGa -3'
miRNA:   3'- -GGcGGACCuGGUCAACCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 23434 0.7 0.789095
Target:  5'- --aCCUGGACCuGgUGGACCUGuAGGn -3'
miRNA:   3'- ggcGGACCUGGuCaACCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 23706 0.89 0.082824
Target:  5'- cCUG-CUGGACCAGaUGGACCUGGAGGa -3'
miRNA:   3'- -GGCgGACCUGGUCaACCUGGACCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.