Results 1 - 20 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 223079 | 0.84 | 0.177361 |
Target: 5'- aCCaGCa-GGACCAGgaGGACCUGGAGGa -3' miRNA: 3'- -GG-CGgaCCUGGUCaaCCUGGACCUCC- -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 222950 | 0.67 | 0.894431 |
Target: 5'- aCCaGCa-GGACCAGcaGGACCaGGAGa -3' miRNA: 3'- -GG-CGgaCCUGGUCaaCCUGGaCCUCc -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 222734 | 0.68 | 0.860763 |
Target: 5'- uUCGCCUGGugCAacugguccuGUUGGAaauCCUGGuccuacuGGu -3' miRNA: 3'- -GGCGGACCugGU---------CAACCU---GGACCu------CC- -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 28593 | 0.66 | 0.931521 |
Target: 5'- gUGCCUGaaggaauuacuguaGcACCugaAGUuccuggUGGACCUGGAGGa -3' miRNA: 3'- gGCGGAC--------------C-UGG---UCA------ACCUGGACCUCC- -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 28524 | 0.7 | 0.771602 |
Target: 5'- cCUG-UUGGACCAGUUGGACCaGucGGa -3' miRNA: 3'- -GGCgGACCUGGUCAACCUGGaCcuCC- -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 28492 | 0.76 | 0.479987 |
Target: 5'- uCCaCCUGGACCAGgaggaccaUcuccaccaguaGGACCUGGAGGu -3' miRNA: 3'- -GGcGGACCUGGUCa-------A-----------CCUGGACCUCC- -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 28375 | 0.73 | 0.64018 |
Target: 5'- aCCGUCaGcACCAGgaGGuCCUGGAGGa -3' miRNA: 3'- -GGCGGaCcUGGUCaaCCuGGACCUCC- -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 28333 | 0.97 | 0.02483 |
Target: 5'- uCCGCCUGGACCuGgaGGACCUGGAGGa -3' miRNA: 3'- -GGCGGACCUGGuCaaCCUGGACCUCC- -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 28273 | 1.12 | 0.002621 |
Target: 5'- uCCGCCUGGACCAGUUGGACCUGGAGGa -3' miRNA: 3'- -GGCGGACCUGGUCAACCUGGACCUCC- -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 28174 | 0.67 | 0.92301 |
Target: 5'- aCCaGCa-GGACCAGUUGGACCa----- -3' miRNA: 3'- -GG-CGgaCCUGGUCAACCUGGaccucc -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 28138 | 0.78 | 0.356538 |
Target: 5'- aCCagUUGGACCAGUUGGACCUGuAGGu -3' miRNA: 3'- -GGcgGACCUGGUCAACCUGGACcUCC- -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 28110 | 0.91 | 0.062701 |
Target: 5'- cCUGUa-GGACCAGUUGGACCUGGAGGa -3' miRNA: 3'- -GGCGgaCCUGGUCAACCUGGACCUCC- -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 27764 | 0.79 | 0.313798 |
Target: 5'- uCCaGCa-GGACCAGUUGGACCUGuGGGa -3' miRNA: 3'- -GG-CGgaCCUGGUCAACCUGGACcUCC- -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 27718 | 0.68 | 0.860763 |
Target: 5'- cCUGUC-GGACCAGUaGGACCUGa--- -3' miRNA: 3'- -GGCGGaCCUGGUCAaCCUGGACcucc -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 27658 | 0.69 | 0.830494 |
Target: 5'- -gGaCCUggaGGACCuGcUGGACCUGGAGu -3' miRNA: 3'- ggC-GGA---CCUGGuCaACCUGGACCUCc -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 27605 | 0.66 | 0.943773 |
Target: 5'- -aGCaccaucauuuCCAGgaGGACCUGGAGGa -3' miRNA: 3'- ggCGgaccu-----GGUCaaCCUGGACCUCC- -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 27557 | 0.89 | 0.087093 |
Target: 5'- aCCaCCUGGACCAccUGGACCUGGAGGa -3' miRNA: 3'- -GGcGGACCUGGUcaACCUGGACCUCC- -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 27524 | 0.66 | 0.932958 |
Target: 5'- uCCaCCUguaGGACCuGaUGGACCUGuAGGa -3' miRNA: 3'- -GGcGGA---CCUGGuCaACCUGGACcUCC- -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 27493 | 0.68 | 0.874815 |
Target: 5'- cCUG-CUGGACCuGUaGGACCaGGAGc -3' miRNA: 3'- -GGCgGACCUGGuCAaCCUGGaCCUCc -5' |
|||||||
31667 | 3' | -57.7 | NC_006883.1 | + | 27005 | 0.67 | 0.91221 |
Target: 5'- aCUGUUUGaaaaccagaACCAGgaGGACCUGGAGa -3' miRNA: 3'- -GGCGGACc--------UGGUCaaCCUGGACCUCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home