Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31668 | 3' | -59.8 | NC_006883.1 | + | 28368 | 1.08 | 0.002542 |
Target: 5'- gCACCAGGAGGUCCUGGAGGACCAGCAg -3' miRNA: 3'- -GUGGUCCUCCAGGACCUCCUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 22079 | 0.88 | 0.051858 |
Target: 5'- gACCAGGAGGaCCUGGAGGACCAccaGCAg -3' miRNA: 3'- gUGGUCCUCCaGGACCUCCUGGU---CGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 223071 | 0.86 | 0.072345 |
Target: 5'- gACCAGGAGGaCCUGGAGGACCAaCAg -3' miRNA: 3'- gUGGUCCUCCaGGACCUCCUGGUcGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 28457 | 0.86 | 0.07421 |
Target: 5'- gACCuGGAGGUCCUGGAGGACCAc-- -3' miRNA: 3'- gUGGuCCUCCAGGACCUCCUGGUcgu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 26989 | 0.86 | 0.078078 |
Target: 5'- aACCAGGAGGaCCUGGAGaACCAGCAg -3' miRNA: 3'- gUGGUCCUCCaGGACCUCcUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 28103 | 0.84 | 0.105644 |
Target: 5'- gACCAGuuGGaCCUGGAGGACCAGCAg -3' miRNA: 3'- gUGGUCcuCCaGGACCUCCUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 22235 | 0.84 | 0.106705 |
Target: 5'- gACCAGGAGGaccacuuggaccaucUggaCCUGGAGGACCAGCAg -3' miRNA: 3'- gUGGUCCUCC---------------A---GGACCUCCUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 27665 | 0.84 | 0.108316 |
Target: 5'- -uCCAGGAGGaCCUGGAGGACCuGCu -3' miRNA: 3'- guGGUCCUCCaGGACCUCCUGGuCGu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 27593 | 0.84 | 0.108316 |
Target: 5'- -uCCAGGAGGaCCUGGAGGACCuGCu -3' miRNA: 3'- guGGUCCUCCaGGACCUCCUGGuCGu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 23699 | 0.81 | 0.160558 |
Target: 5'- gACCAGauGGaCCUGGAGGACCAGCAg -3' miRNA: 3'- gUGGUCcuCCaGGACCUCCUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 28325 | 0.79 | 0.199118 |
Target: 5'- gACCuGGAGGaCCUGGAGGACCAuCAu -3' miRNA: 3'- gUGGuCCUCCaGGACCUCCUGGUcGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 21743 | 0.79 | 0.199118 |
Target: 5'- -uCCAGuuGGaCCUGGAGGACCAGCAg -3' miRNA: 3'- guGGUCcuCCaGGACCUCCUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 25012 | 0.79 | 0.223863 |
Target: 5'- gACCuGGAGGaCCUGGAGGACC-GCu -3' miRNA: 3'- gUGGuCCUCCaGGACCUCCUGGuCGu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 21977 | 0.78 | 0.229116 |
Target: 5'- gACCAGGAGGaCCUGcAGGACCAGgAg -3' miRNA: 3'- gUGGUCCUCCaGGACcUCCUGGUCgU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 23204 | 0.78 | 0.239933 |
Target: 5'- gACCAGGAGGaccaCUUGGAccaucaGGACCAGCAg -3' miRNA: 3'- gUGGUCCUCCa---GGACCU------CCUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 21780 | 0.78 | 0.256954 |
Target: 5'- gACCAGaAGGaCCUGGAGGACCAGa- -3' miRNA: 3'- gUGGUCcUCCaGGACCUCCUGGUCgu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 28412 | 0.78 | 0.256954 |
Target: 5'- aACCuGGAGGaCCUGGAGGACCAc-- -3' miRNA: 3'- gUGGuCCUCCaGGACCUCCUGGUcgu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 21945 | 0.77 | 0.262844 |
Target: 5'- gUACCAGGAGGaCCaguUGGAccuguuGGACCAGCAu -3' miRNA: 3'- -GUGGUCCUCCaGG---ACCU------CCUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 26804 | 0.77 | 0.262844 |
Target: 5'- gACCAGuuGGaCCUGGuGGACCAGCAg -3' miRNA: 3'- gUGGUCcuCCaGGACCuCCUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 23734 | 0.75 | 0.342184 |
Target: 5'- -uCCAGGAGGaccugcuggaCCUGGAGGACCuGCu -3' miRNA: 3'- guGGUCCUCCa---------GGACCUCCUGGuCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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