miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31668 3' -59.8 NC_006883.1 + 21743 0.79 0.199118
Target:  5'- -uCCAGuuGGaCCUGGAGGACCAGCAg -3'
miRNA:   3'- guGGUCcuCCaGGACCUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 21780 0.78 0.256954
Target:  5'- gACCAGaAGGaCCUGGAGGACCAGa- -3'
miRNA:   3'- gUGGUCcUCCaGGACCUCCUGGUCgu -5'
31668 3' -59.8 NC_006883.1 + 21843 0.66 0.856473
Target:  5'- gACCAGGAccaccacucGGaccaacaucaCCUuGAGGGCCAGCAg -3'
miRNA:   3'- gUGGUCCU---------CCa---------GGAcCUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 21879 0.72 0.517984
Target:  5'- cCACCAGcAGGaCCa-GAGGACCAGCAg -3'
miRNA:   3'- -GUGGUCcUCCaGGacCUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 21945 0.77 0.262844
Target:  5'- gUACCAGGAGGaCCaguUGGAccuguuGGACCAGCAu -3'
miRNA:   3'- -GUGGUCCUCCaGG---ACCU------CCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 21977 0.78 0.229116
Target:  5'- gACCAGGAGGaCCUGcAGGACCAGgAg -3'
miRNA:   3'- gUGGUCCUCCaGGACcUCCUGGUCgU- -5'
31668 3' -59.8 NC_006883.1 + 22079 0.88 0.051858
Target:  5'- gACCAGGAGGaCCUGGAGGACCAccaGCAg -3'
miRNA:   3'- gUGGUCCUCCaGGACCUCCUGGU---CGU- -5'
31668 3' -59.8 NC_006883.1 + 22122 0.67 0.820739
Target:  5'- cCAgCAGGAccaucuccaccacucGGaCCUGGAGGACCAc-- -3'
miRNA:   3'- -GUgGUCCU---------------CCaGGACCUCCUGGUcgu -5'
31668 3' -59.8 NC_006883.1 + 22161 0.75 0.372214
Target:  5'- cCACCAcuAGGaCCUGGAGGACCAGg- -3'
miRNA:   3'- -GUGGUccUCCaGGACCUCCUGGUCgu -5'
31668 3' -59.8 NC_006883.1 + 22235 0.84 0.106705
Target:  5'- gACCAGGAGGaccacuuggaccaucUggaCCUGGAGGACCAGCAg -3'
miRNA:   3'- gUGGUCCUCC---------------A---GGACCUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 23204 0.78 0.239933
Target:  5'- gACCAGGAGGaccaCUUGGAccaucaGGACCAGCAg -3'
miRNA:   3'- gUGGUCCUCCa---GGACCU------CCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 23243 0.75 0.36454
Target:  5'- gACCAGuuGGaCCUGGAGGACCAccaGCAg -3'
miRNA:   3'- gUGGUCcuCCaGGACCUCCUGGU---CGU- -5'
31668 3' -59.8 NC_006883.1 + 23289 0.73 0.472391
Target:  5'- aUACCuGGAGGaCCUuGAGGACCAGgAg -3'
miRNA:   3'- -GUGGuCCUCCaGGAcCUCCUGGUCgU- -5'
31668 3' -59.8 NC_006883.1 + 23342 0.72 0.490398
Target:  5'- gACCAGuuGGaCCUGGAGaACCAGCAg -3'
miRNA:   3'- gUGGUCcuCCaGGACCUCcUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 23446 0.66 0.863748
Target:  5'- -uCCAGcAGGUCCUccAGGuCCAGCAg -3'
miRNA:   3'- guGGUCcUCCAGGAccUCCuGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 23699 0.81 0.160558
Target:  5'- gACCAGauGGaCCUGGAGGACCAGCAg -3'
miRNA:   3'- gUGGUCcuCCaGGACCUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 23734 0.75 0.342184
Target:  5'- -uCCAGGAGGaccugcuggaCCUGGAGGACCuGCu -3'
miRNA:   3'- guGGUCCUCCa---------GGACCUCCUGGuCGu -5'
31668 3' -59.8 NC_006883.1 + 25012 0.79 0.223863
Target:  5'- gACCuGGAGGaCCUGGAGGACC-GCu -3'
miRNA:   3'- gUGGuCCUCCaGGACCUCCUGGuCGu -5'
31668 3' -59.8 NC_006883.1 + 26272 0.66 0.863748
Target:  5'- -uCCAGcAGGUCCUacAGGuCCAGCAg -3'
miRNA:   3'- guGGUCcUCCAGGAccUCCuGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 26560 0.68 0.729003
Target:  5'- -uCCAGGAGGaCCUGcuGGACCuGUAg -3'
miRNA:   3'- guGGUCCUCCaGGACcuCCUGGuCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.