Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31668 | 3' | -59.8 | NC_006883.1 | + | 26669 | 0.68 | 0.747553 |
Target: 5'- gACCuGGAGGaccgUCUGGAccaguuGGACCAGUu -3' miRNA: 3'- gUGGuCCUCCa---GGACCU------CCUGGUCGu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 26713 | 0.68 | 0.765737 |
Target: 5'- -uCCAGGAGGaccugcuggaCCUGGAGuACCAGUu -3' miRNA: 3'- guGGUCCUCCa---------GGACCUCcUGGUCGu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 26777 | 0.67 | 0.817468 |
Target: 5'- gACCAGuuGGaCCUGcAGGACCAGUu -3' miRNA: 3'- gUGGUCcuCCaGGACcUCCUGGUCGu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 26804 | 0.77 | 0.262844 |
Target: 5'- gACCAGuuGGaCCUGGuGGACCAGCAg -3' miRNA: 3'- gUGGUCcuCCaGGACCuCCUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 26989 | 0.86 | 0.078078 |
Target: 5'- aACCAGGAGGaCCUGGAGaACCAGCAg -3' miRNA: 3'- gUGGUCCUCCaGGACCUCcUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 27287 | 0.68 | 0.73832 |
Target: 5'- -uCCAGGuGGUCCaGGugguggcacAGGuCCAGCAg -3' miRNA: 3'- guGGUCCuCCAGGaCC---------UCCuGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 27556 | 0.69 | 0.671791 |
Target: 5'- cCACCuGGAccaccuGGaCCUGGAGGACCAu-- -3' miRNA: 3'- -GUGGuCCU------CCaGGACCUCCUGGUcgu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 27593 | 0.84 | 0.108316 |
Target: 5'- -uCCAGGAGGaCCUGGAGGACCuGCu -3' miRNA: 3'- guGGUCCUCCaGGACCUCCUGGuCGu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 27665 | 0.84 | 0.108316 |
Target: 5'- -uCCAGGAGGaCCUGGAGGACCuGCu -3' miRNA: 3'- guGGUCCUCCaGGACCUCCUGGuCGu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 27738 | 0.7 | 0.652405 |
Target: 5'- gACCAGuuGGUCCUGuGGgaccugucGGACCAGUAg -3' miRNA: 3'- gUGGUCcuCCAGGAC-CU--------CCUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 28103 | 0.84 | 0.105644 |
Target: 5'- gACCAGuuGGaCCUGGAGGACCAGCAg -3' miRNA: 3'- gUGGUCcuCCaGGACCUCCUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 28265 | 0.71 | 0.574821 |
Target: 5'- gACCAGuuGGaCCUGGAGGACCAu-- -3' miRNA: 3'- gUGGUCcuCCaGGACCUCCUGGUcgu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 28325 | 0.79 | 0.199118 |
Target: 5'- gACCuGGAGGaCCUGGAGGACCAuCAu -3' miRNA: 3'- gUGGuCCUCCaGGACCUCCUGGUcGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 28368 | 1.08 | 0.002542 |
Target: 5'- gCACCAGGAGGUCCUGGAGGACCAGCAg -3' miRNA: 3'- -GUGGUCCUCCAGGACCUCCUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 28412 | 0.78 | 0.256954 |
Target: 5'- aACCuGGAGGaCCUGGAGGACCAc-- -3' miRNA: 3'- gUGGuCCUCCaGGACCUCCUGGUcgu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 28457 | 0.86 | 0.07421 |
Target: 5'- gACCuGGAGGUCCUGGAGGACCAc-- -3' miRNA: 3'- gUGGuCCUCCAGGACCUCCUGGUcgu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 28561 | 0.67 | 0.792188 |
Target: 5'- -uCCuGGuGGaCCUGGAGGACCAc-- -3' miRNA: 3'- guGGuCCuCCaGGACCUCCUGGUcgu -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 186615 | 0.66 | 0.833573 |
Target: 5'- aCACCAGGAaaacUgCUGaAGGACCAGUAg -3' miRNA: 3'- -GUGGUCCUcc--AgGACcUCCUGGUCGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 211189 | 0.7 | 0.613514 |
Target: 5'- uGCaCAGGAuGGagcuuaUCCUGGAGGACCA-CAa -3' miRNA: 3'- gUG-GUCCU-CC------AGGACCUCCUGGUcGU- -5' |
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31668 | 3' | -59.8 | NC_006883.1 | + | 222933 | 0.71 | 0.555672 |
Target: 5'- gACCAGGAGaaCCaGuAGGACCAGCAg -3' miRNA: 3'- gUGGUCCUCcaGGaCcUCCUGGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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