miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31668 3' -59.8 NC_006883.1 + 223071 0.86 0.072345
Target:  5'- gACCAGGAGGaCCUGGAGGACCAaCAg -3'
miRNA:   3'- gUGGUCCUCCaGGACCUCCUGGUcGU- -5'
31668 3' -59.8 NC_006883.1 + 222933 0.71 0.555672
Target:  5'- gACCAGGAGaaCCaGuAGGACCAGCAg -3'
miRNA:   3'- gUGGUCCUCcaGGaCcUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 211189 0.7 0.613514
Target:  5'- uGCaCAGGAuGGagcuuaUCCUGGAGGACCA-CAa -3'
miRNA:   3'- gUG-GUCCU-CC------AGGACCUCCUGGUcGU- -5'
31668 3' -59.8 NC_006883.1 + 186615 0.66 0.833573
Target:  5'- aCACCAGGAaaacUgCUGaAGGACCAGUAg -3'
miRNA:   3'- -GUGGUCCUcc--AgGACcUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 28561 0.67 0.792188
Target:  5'- -uCCuGGuGGaCCUGGAGGACCAc-- -3'
miRNA:   3'- guGGuCCuCCaGGACCUCCUGGUcgu -5'
31668 3' -59.8 NC_006883.1 + 28457 0.86 0.07421
Target:  5'- gACCuGGAGGUCCUGGAGGACCAc-- -3'
miRNA:   3'- gUGGuCCUCCAGGACCUCCUGGUcgu -5'
31668 3' -59.8 NC_006883.1 + 28412 0.78 0.256954
Target:  5'- aACCuGGAGGaCCUGGAGGACCAc-- -3'
miRNA:   3'- gUGGuCCUCCaGGACCUCCUGGUcgu -5'
31668 3' -59.8 NC_006883.1 + 28368 1.08 0.002542
Target:  5'- gCACCAGGAGGUCCUGGAGGACCAGCAg -3'
miRNA:   3'- -GUGGUCCUCCAGGACCUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 28325 0.79 0.199118
Target:  5'- gACCuGGAGGaCCUGGAGGACCAuCAu -3'
miRNA:   3'- gUGGuCCUCCaGGACCUCCUGGUcGU- -5'
31668 3' -59.8 NC_006883.1 + 28265 0.71 0.574821
Target:  5'- gACCAGuuGGaCCUGGAGGACCAu-- -3'
miRNA:   3'- gUGGUCcuCCaGGACCUCCUGGUcgu -5'
31668 3' -59.8 NC_006883.1 + 28103 0.84 0.105644
Target:  5'- gACCAGuuGGaCCUGGAGGACCAGCAg -3'
miRNA:   3'- gUGGUCcuCCaGGACCUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 27738 0.7 0.652405
Target:  5'- gACCAGuuGGUCCUGuGGgaccugucGGACCAGUAg -3'
miRNA:   3'- gUGGUCcuCCAGGAC-CU--------CCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 27665 0.84 0.108316
Target:  5'- -uCCAGGAGGaCCUGGAGGACCuGCu -3'
miRNA:   3'- guGGUCCUCCaGGACCUCCUGGuCGu -5'
31668 3' -59.8 NC_006883.1 + 27593 0.84 0.108316
Target:  5'- -uCCAGGAGGaCCUGGAGGACCuGCu -3'
miRNA:   3'- guGGUCCUCCaGGACCUCCUGGuCGu -5'
31668 3' -59.8 NC_006883.1 + 27556 0.69 0.671791
Target:  5'- cCACCuGGAccaccuGGaCCUGGAGGACCAu-- -3'
miRNA:   3'- -GUGGuCCU------CCaGGACCUCCUGGUcgu -5'
31668 3' -59.8 NC_006883.1 + 27287 0.68 0.73832
Target:  5'- -uCCAGGuGGUCCaGGugguggcacAGGuCCAGCAg -3'
miRNA:   3'- guGGUCCuCCAGGaCC---------UCCuGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 26989 0.86 0.078078
Target:  5'- aACCAGGAGGaCCUGGAGaACCAGCAg -3'
miRNA:   3'- gUGGUCCUCCaGGACCUCcUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 26804 0.77 0.262844
Target:  5'- gACCAGuuGGaCCUGGuGGACCAGCAg -3'
miRNA:   3'- gUGGUCcuCCaGGACCuCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 26777 0.67 0.817468
Target:  5'- gACCAGuuGGaCCUGcAGGACCAGUu -3'
miRNA:   3'- gUGGUCcuCCaGGACcUCCUGGUCGu -5'
31668 3' -59.8 NC_006883.1 + 26713 0.68 0.765737
Target:  5'- -uCCAGGAGGaccugcuggaCCUGGAGuACCAGUu -3'
miRNA:   3'- guGGUCCUCCa---------GGACCUCcUGGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.