miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31668 3' -59.8 NC_006883.1 + 23243 0.75 0.36454
Target:  5'- gACCAGuuGGaCCUGGAGGACCAccaGCAg -3'
miRNA:   3'- gUGGUCcuCCaGGACCUCCUGGU---CGU- -5'
31668 3' -59.8 NC_006883.1 + 23734 0.75 0.342184
Target:  5'- -uCCAGGAGGaccugcuggaCCUGGAGGACCuGCu -3'
miRNA:   3'- guGGUCCUCCa---------GGACCUCCUGGuCGu -5'
31668 3' -59.8 NC_006883.1 + 21945 0.77 0.262844
Target:  5'- gUACCAGGAGGaCCaguUGGAccuguuGGACCAGCAu -3'
miRNA:   3'- -GUGGUCCUCCaGG---ACCU------CCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 26804 0.77 0.262844
Target:  5'- gACCAGuuGGaCCUGGuGGACCAGCAg -3'
miRNA:   3'- gUGGUCcuCCaGGACCuCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 28412 0.78 0.256954
Target:  5'- aACCuGGAGGaCCUGGAGGACCAc-- -3'
miRNA:   3'- gUGGuCCUCCaGGACCUCCUGGUcgu -5'
31668 3' -59.8 NC_006883.1 + 21780 0.78 0.256954
Target:  5'- gACCAGaAGGaCCUGGAGGACCAGa- -3'
miRNA:   3'- gUGGUCcUCCaGGACCUCCUGGUCgu -5'
31668 3' -59.8 NC_006883.1 + 23204 0.78 0.239933
Target:  5'- gACCAGGAGGaccaCUUGGAccaucaGGACCAGCAg -3'
miRNA:   3'- gUGGUCCUCCa---GGACCU------CCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 21977 0.78 0.229116
Target:  5'- gACCAGGAGGaCCUGcAGGACCAGgAg -3'
miRNA:   3'- gUGGUCCUCCaGGACcUCCUGGUCgU- -5'
31668 3' -59.8 NC_006883.1 + 25012 0.79 0.223863
Target:  5'- gACCuGGAGGaCCUGGAGGACC-GCu -3'
miRNA:   3'- gUGGuCCUCCaGGACCUCCUGGuCGu -5'
31668 3' -59.8 NC_006883.1 + 28325 0.79 0.199118
Target:  5'- gACCuGGAGGaCCUGGAGGACCAuCAu -3'
miRNA:   3'- gUGGuCCUCCaGGACCUCCUGGUcGU- -5'
31668 3' -59.8 NC_006883.1 + 21743 0.79 0.199118
Target:  5'- -uCCAGuuGGaCCUGGAGGACCAGCAg -3'
miRNA:   3'- guGGUCcuCCaGGACCUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 23699 0.81 0.160558
Target:  5'- gACCAGauGGaCCUGGAGGACCAGCAg -3'
miRNA:   3'- gUGGUCcuCCaGGACCUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 27593 0.84 0.108316
Target:  5'- -uCCAGGAGGaCCUGGAGGACCuGCu -3'
miRNA:   3'- guGGUCCUCCaGGACCUCCUGGuCGu -5'
31668 3' -59.8 NC_006883.1 + 27665 0.84 0.108316
Target:  5'- -uCCAGGAGGaCCUGGAGGACCuGCu -3'
miRNA:   3'- guGGUCCUCCaGGACCUCCUGGuCGu -5'
31668 3' -59.8 NC_006883.1 + 22235 0.84 0.106705
Target:  5'- gACCAGGAGGaccacuuggaccaucUggaCCUGGAGGACCAGCAg -3'
miRNA:   3'- gUGGUCCUCC---------------A---GGACCUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 28103 0.84 0.105644
Target:  5'- gACCAGuuGGaCCUGGAGGACCAGCAg -3'
miRNA:   3'- gUGGUCcuCCaGGACCUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 26989 0.86 0.078078
Target:  5'- aACCAGGAGGaCCUGGAGaACCAGCAg -3'
miRNA:   3'- gUGGUCCUCCaGGACCUCcUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 28457 0.86 0.07421
Target:  5'- gACCuGGAGGUCCUGGAGGACCAc-- -3'
miRNA:   3'- gUGGuCCUCCAGGACCUCCUGGUcgu -5'
31668 3' -59.8 NC_006883.1 + 223071 0.86 0.072345
Target:  5'- gACCAGGAGGaCCUGGAGGACCAaCAg -3'
miRNA:   3'- gUGGUCCUCCaGGACCUCCUGGUcGU- -5'
31668 3' -59.8 NC_006883.1 + 22079 0.88 0.051858
Target:  5'- gACCAGGAGGaCCUGGAGGACCAccaGCAg -3'
miRNA:   3'- gUGGUCCUCCaGGACCUCCUGGU---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.