miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31668 5' -61.1 NC_006883.1 + 28334 1.09 0.00177
Target:  5'- uUCCGCCUGGACCUGGAGGACCUGGAGg -3'
miRNA:   3'- -AGGCGGACCUGGACCUCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 25023 0.89 0.044806
Target:  5'- aCCuCCuguUGGACCUGGAGGACCUGGAGg -3'
miRNA:   3'- aGGcGG---ACCUGGACCUCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 28274 0.88 0.047142
Target:  5'- uUCCGCCUGGACCaGuuGGACCUGGAGg -3'
miRNA:   3'- -AGGCGGACCUGGaCcuCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 22087 0.85 0.074243
Target:  5'- aCCaCUUGGACCaGGAGGACCUGGAGg -3'
miRNA:   3'- aGGcGGACCUGGaCCUCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 26677 0.84 0.090626
Target:  5'- aCCaCCUGGACCUGGAGGACCgucUGGAc -3'
miRNA:   3'- aGGcGGACCUGGACCUCCUGG---ACCUc -5'
31668 5' -61.1 NC_006883.1 + 24957 0.82 0.127819
Target:  5'- aCCaCUUGGACCUGuAGGACCUGGAGg -3'
miRNA:   3'- aGGcGGACCUGGACcUCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 28469 0.8 0.154994
Target:  5'- cUCCaCCaguaGGACCUGGAGGuCCUGGAGg -3'
miRNA:   3'- -AGGcGGa---CCUGGACCUCCuGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 21791 0.8 0.162563
Target:  5'- aCCGCCaccUGGACCaGaAGGACCUGGAGg -3'
miRNA:   3'- aGGCGG---ACCUGGaCcUCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 223079 0.8 0.162563
Target:  5'- aCCaGCa-GGACCaGGAGGACCUGGAGg -3'
miRNA:   3'- aGG-CGgaCCUGGaCCUCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 27548 0.79 0.200871
Target:  5'- aCCaCCUGGACCUGGAGGACCa---- -3'
miRNA:   3'- aGGcGGACCUGGACCUCCUGGaccuc -5'
31668 5' -61.1 NC_006883.1 + 23724 0.79 0.200871
Target:  5'- cCUG-CUGGACCUGGAGGACCugcUGGAc -3'
miRNA:   3'- aGGCgGACCUGGACCUCCUGG---ACCUc -5'
31668 5' -61.1 NC_006883.1 + 22216 0.77 0.241288
Target:  5'- aCCaUCUGGACCUGGAGGACCagcaGGAc -3'
miRNA:   3'- aGGcGGACCUGGACCUCCUGGa---CCUc -5'
31668 5' -61.1 NC_006883.1 + 21986 0.76 0.301076
Target:  5'- cUCCaCUUGGACCaGGAGGACCUGcAGg -3'
miRNA:   3'- -AGGcGGACCUGGaCCUCCUGGACcUC- -5'
31668 5' -61.1 NC_006883.1 + 23444 0.75 0.307646
Target:  5'- uUCCuguauuaCCUGGACCUGGuGGACCUGuAGg -3'
miRNA:   3'- -AGGc------GGACCUGGACCuCCUGGACcUC- -5'
31668 5' -61.1 NC_006883.1 + 22180 0.75 0.335017
Target:  5'- aCCaCUaGGACCUGGAGGACCaccacuaggaccUGGAGg -3'
miRNA:   3'- aGGcGGaCCUGGACCUCCUGG------------ACCUC- -5'
31668 5' -61.1 NC_006883.1 + 28420 0.74 0.349356
Target:  5'- aCCaUCaGaACCUGGAGGACCUGGAGg -3'
miRNA:   3'- aGGcGGaCcUGGACCUCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 28493 0.73 0.435745
Target:  5'- uUCCaCCUGGACCaGGAGGACCa---- -3'
miRNA:   3'- -AGGcGGACCUGGaCCUCCUGGaccuc -5'
31668 5' -61.1 NC_006883.1 + 21744 0.72 0.444195
Target:  5'- uUCCagUUGGACCUGGAGGACCagcaGGAc -3'
miRNA:   3'- -AGGcgGACCUGGACCUCCUGGa---CCUc -5'
31668 5' -61.1 NC_006883.1 + 23221 0.72 0.444195
Target:  5'- aCCaGCa-GGACCaGGAGGACCaGGAGg -3'
miRNA:   3'- aGG-CGgaCCUGGaCCUCCUGGaCCUC- -5'
31668 5' -61.1 NC_006883.1 + 27493 0.72 0.487759
Target:  5'- cCUG-CUGGACCUGuAGGACCaGGAGc -3'
miRNA:   3'- aGGCgGACCUGGACcUCCUGGaCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.