miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31668 5' -61.1 NC_006883.1 + 21715 0.68 0.713287
Target:  5'- gUCCuCCUGGuCCaagUGGAGGuCCUGGu- -3'
miRNA:   3'- -AGGcGGACCuGG---ACCUCCuGGACCuc -5'
31668 5' -61.1 NC_006883.1 + 21744 0.72 0.444195
Target:  5'- uUCCagUUGGACCUGGAGGACCagcaGGAc -3'
miRNA:   3'- -AGGcgGACCUGGACCUCCUGGa---CCUc -5'
31668 5' -61.1 NC_006883.1 + 21791 0.8 0.162563
Target:  5'- aCCGCCaccUGGACCaGaAGGACCUGGAGg -3'
miRNA:   3'- aGGCGG---ACCUGGaCcUCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 21902 0.67 0.740946
Target:  5'- gCgGaCCUugcGGACCUGGAGGACCaccagcaGGAc -3'
miRNA:   3'- aGgC-GGA---CCUGGACCUCCUGGa------CCUc -5'
31668 5' -61.1 NC_006883.1 + 21986 0.76 0.301076
Target:  5'- cUCCaCUUGGACCaGGAGGACCUGcAGg -3'
miRNA:   3'- -AGGcGGACCUGGaCCUCCUGGACcUC- -5'
31668 5' -61.1 NC_006883.1 + 22030 0.69 0.666078
Target:  5'- aCCGUCUGGACCcGuAGGACCagcaGGAc -3'
miRNA:   3'- aGGCGGACCUGGaCcUCCUGGa---CCUc -5'
31668 5' -61.1 NC_006883.1 + 22087 0.85 0.074243
Target:  5'- aCCaCUUGGACCaGGAGGACCUGGAGg -3'
miRNA:   3'- aGGcGGACCUGGaCCUCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 22132 0.69 0.622088
Target:  5'- aCCaCUUGGACCagcaGGAccaucuccaccacucGGACCUGGAGg -3'
miRNA:   3'- aGGcGGACCUGGa---CCU---------------CCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 22180 0.75 0.335017
Target:  5'- aCCaCUaGGACCUGGAGGACCaccacuaggaccUGGAGg -3'
miRNA:   3'- aGGcGGaCCUGGACCUCCUGG------------ACCUC- -5'
31668 5' -61.1 NC_006883.1 + 22216 0.77 0.241288
Target:  5'- aCCaUCUGGACCUGGAGGACCagcaGGAc -3'
miRNA:   3'- aGGcGGACCUGGACCUCCUGGa---CCUc -5'
31668 5' -61.1 NC_006883.1 + 23140 0.71 0.514842
Target:  5'- aCCagUUGGACCUGGAGcACCUGGAu -3'
miRNA:   3'- aGGcgGACCUGGACCUCcUGGACCUc -5'
31668 5' -61.1 NC_006883.1 + 23221 0.72 0.444195
Target:  5'- aCCaGCa-GGACCaGGAGGACCaGGAGg -3'
miRNA:   3'- aGG-CGgaCCUGGaCCUCCUGGaCCUC- -5'
31668 5' -61.1 NC_006883.1 + 23251 0.67 0.767857
Target:  5'- aCCaGCa-GGACCaGuuGGACCUGGAGg -3'
miRNA:   3'- aGG-CGgaCCUGGaCcuCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 23293 0.68 0.685084
Target:  5'- aCCGauaCCUggaGGACCUuGAGGACCaGGAGc -3'
miRNA:   3'- aGGC---GGA---CCUGGAcCUCCUGGaCCUC- -5'
31668 5' -61.1 NC_006883.1 + 23350 0.66 0.793817
Target:  5'- aCCuaCaGGACCaGuuGGACCUGGAGa -3'
miRNA:   3'- aGGcgGaCCUGGaCcuCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 23402 0.69 0.627831
Target:  5'- gUCCagUUGGACCUGuGGGACCUGuGGGa -3'
miRNA:   3'- -AGGcgGACCUGGACcUCCUGGAC-CUC- -5'
31668 5' -61.1 NC_006883.1 + 23444 0.75 0.307646
Target:  5'- uUCCuguauuaCCUGGACCUGGuGGACCUGuAGg -3'
miRNA:   3'- -AGGc------GGACCUGGACCuCCUGGACcUC- -5'
31668 5' -61.1 NC_006883.1 + 23698 0.71 0.551852
Target:  5'- aCCagaUGGACCUGGAGGACCagcaGGAc -3'
miRNA:   3'- aGGcggACCUGGACCUCCUGGa---CCUc -5'
31668 5' -61.1 NC_006883.1 + 23724 0.79 0.200871
Target:  5'- cCUG-CUGGACCUGGAGGACCugcUGGAc -3'
miRNA:   3'- aGGCgGACCUGGACCUCCUGG---ACCUc -5'
31668 5' -61.1 NC_006883.1 + 24957 0.82 0.127819
Target:  5'- aCCaCUUGGACCUGuAGGACCUGGAGg -3'
miRNA:   3'- aGGcGGACCUGGACcUCCUGGACCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.