Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31668 | 5' | -61.1 | NC_006883.1 | + | 223079 | 0.8 | 0.162563 |
Target: 5'- aCCaGCa-GGACCaGGAGGACCUGGAGg -3' miRNA: 3'- aGG-CGgaCCUGGaCCUCCUGGACCUC- -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 28578 | 0.69 | 0.666078 |
Target: 5'- aCUGuagcaCCUGaaguuCCUGGuGGACCUGGAGg -3' miRNA: 3'- aGGC-----GGACcu---GGACCuCCUGGACCUC- -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 28493 | 0.73 | 0.435745 |
Target: 5'- uUCCaCCUGGACCaGGAGGACCa---- -3' miRNA: 3'- -AGGcGGACCUGGaCCUCCUGGaccuc -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 28469 | 0.8 | 0.154994 |
Target: 5'- cUCCaCCaguaGGACCUGGAGGuCCUGGAGg -3' miRNA: 3'- -AGGcGGa---CCUGGACCUCCuGGACCUC- -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 28420 | 0.74 | 0.349356 |
Target: 5'- aCCaUCaGaACCUGGAGGACCUGGAGg -3' miRNA: 3'- aGGcGGaCcUGGACCUCCUGGACCUC- -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 28375 | 0.7 | 0.599153 |
Target: 5'- aCCGUCaGcACCaGGAGGuCCUGGAGg -3' miRNA: 3'- aGGCGGaCcUGGaCCUCCuGGACCUC- -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 28334 | 1.09 | 0.00177 |
Target: 5'- uUCCGCCUGGACCUGGAGGACCUGGAGg -3' miRNA: 3'- -AGGCGGACCUGGACCUCCUGGACCUC- -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 28274 | 0.88 | 0.047142 |
Target: 5'- uUCCGCCUGGACCaGuuGGACCUGGAGg -3' miRNA: 3'- -AGGCGGACCUGGaCcuCCUGGACCUC- -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 28102 | 0.71 | 0.533233 |
Target: 5'- aCCagUUGGACCUGGAGGACCagcaGGAc -3' miRNA: 3'- aGGcgGACCUGGACCUCCUGGa---CCUc -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 27666 | 0.71 | 0.524007 |
Target: 5'- uUCCaggaGGACCUGGAGGACCUgcuggaccuGGAGu -3' miRNA: 3'- -AGGcggaCCUGGACCUCCUGGA---------CCUC- -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 27594 | 0.7 | 0.570664 |
Target: 5'- uUCCaggaGGACCUGGAGGACCugcUGGAc -3' miRNA: 3'- -AGGcggaCCUGGACCUCCUGG---ACCUc -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 27548 | 0.79 | 0.200871 |
Target: 5'- aCCaCCUGGACCUGGAGGACCa---- -3' miRNA: 3'- aGGcGGACCUGGACCUCCUGGaccuc -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 27493 | 0.72 | 0.487759 |
Target: 5'- cCUG-CUGGACCUGuAGGACCaGGAGc -3' miRNA: 3'- aGGCgGACCUGGACcUCCUGGaCCUC- -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 27005 | 0.69 | 0.646975 |
Target: 5'- aCUGUUUGaaaaccagaACCaGGAGGACCUGGAGa -3' miRNA: 3'- aGGCGGACc--------UGGaCCUCCUGGACCUC- -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 26728 | 0.7 | 0.581078 |
Target: 5'- aUCUGCUccaucauuuccaggaGGACCUGcuGGACCUGGAGu -3' miRNA: 3'- -AGGCGGa--------------CCUGGACcuCCUGGACCUC- -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 26677 | 0.84 | 0.090626 |
Target: 5'- aCCaCCUGGACCUGGAGGACCgucUGGAc -3' miRNA: 3'- aGGcGGACCUGGACCUCCUGG---ACCUc -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 26550 | 0.67 | 0.7318 |
Target: 5'- cCUG-CUGGACCUGuAGGACCugcUGGAc -3' miRNA: 3'- aGGCgGACCUGGACcUCCUGG---ACCUc -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 25023 | 0.89 | 0.044806 |
Target: 5'- aCCuCCuguUGGACCUGGAGGACCUGGAGg -3' miRNA: 3'- aGGcGG---ACCUGGACCUCCUGGACCUC- -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 24957 | 0.82 | 0.127819 |
Target: 5'- aCCaCUUGGACCUGuAGGACCUGGAGg -3' miRNA: 3'- aGGcGGACCUGGACcUCCUGGACCUC- -5' |
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31668 | 5' | -61.1 | NC_006883.1 | + | 23724 | 0.79 | 0.200871 |
Target: 5'- cCUG-CUGGACCUGGAGGACCugcUGGAc -3' miRNA: 3'- aGGCgGACCUGGACCUCCUGG---ACCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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