miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31668 5' -61.1 NC_006883.1 + 25023 0.89 0.044806
Target:  5'- aCCuCCuguUGGACCUGGAGGACCUGGAGg -3'
miRNA:   3'- aGGcGG---ACCUGGACCUCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 26550 0.67 0.7318
Target:  5'- cCUG-CUGGACCUGuAGGACCugcUGGAc -3'
miRNA:   3'- aGGCgGACCUGGACcUCCUGG---ACCUc -5'
31668 5' -61.1 NC_006883.1 + 26677 0.84 0.090626
Target:  5'- aCCaCCUGGACCUGGAGGACCgucUGGAc -3'
miRNA:   3'- aGGcGGACCUGGACCUCCUGG---ACCUc -5'
31668 5' -61.1 NC_006883.1 + 26728 0.7 0.581078
Target:  5'- aUCUGCUccaucauuuccaggaGGACCUGcuGGACCUGGAGu -3'
miRNA:   3'- -AGGCGGa--------------CCUGGACcuCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 27005 0.69 0.646975
Target:  5'- aCUGUUUGaaaaccagaACCaGGAGGACCUGGAGa -3'
miRNA:   3'- aGGCGGACc--------UGGaCCUCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 27493 0.72 0.487759
Target:  5'- cCUG-CUGGACCUGuAGGACCaGGAGc -3'
miRNA:   3'- aGGCgGACCUGGACcUCCUGGaCCUC- -5'
31668 5' -61.1 NC_006883.1 + 27548 0.79 0.200871
Target:  5'- aCCaCCUGGACCUGGAGGACCa---- -3'
miRNA:   3'- aGGcGGACCUGGACCUCCUGGaccuc -5'
31668 5' -61.1 NC_006883.1 + 27594 0.7 0.570664
Target:  5'- uUCCaggaGGACCUGGAGGACCugcUGGAc -3'
miRNA:   3'- -AGGcggaCCUGGACCUCCUGG---ACCUc -5'
31668 5' -61.1 NC_006883.1 + 27666 0.71 0.524007
Target:  5'- uUCCaggaGGACCUGGAGGACCUgcuggaccuGGAGu -3'
miRNA:   3'- -AGGcggaCCUGGACCUCCUGGA---------CCUC- -5'
31668 5' -61.1 NC_006883.1 + 28102 0.71 0.533233
Target:  5'- aCCagUUGGACCUGGAGGACCagcaGGAc -3'
miRNA:   3'- aGGcgGACCUGGACCUCCUGGa---CCUc -5'
31668 5' -61.1 NC_006883.1 + 28274 0.88 0.047142
Target:  5'- uUCCGCCUGGACCaGuuGGACCUGGAGg -3'
miRNA:   3'- -AGGCGGACCUGGaCcuCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 28334 1.09 0.00177
Target:  5'- uUCCGCCUGGACCUGGAGGACCUGGAGg -3'
miRNA:   3'- -AGGCGGACCUGGACCUCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 28375 0.7 0.599153
Target:  5'- aCCGUCaGcACCaGGAGGuCCUGGAGg -3'
miRNA:   3'- aGGCGGaCcUGGaCCUCCuGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 28420 0.74 0.349356
Target:  5'- aCCaUCaGaACCUGGAGGACCUGGAGg -3'
miRNA:   3'- aGGcGGaCcUGGACCUCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 28469 0.8 0.154994
Target:  5'- cUCCaCCaguaGGACCUGGAGGuCCUGGAGg -3'
miRNA:   3'- -AGGcGGa---CCUGGACCUCCuGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 28493 0.73 0.435745
Target:  5'- uUCCaCCUGGACCaGGAGGACCa---- -3'
miRNA:   3'- -AGGcGGACCUGGaCCUCCUGGaccuc -5'
31668 5' -61.1 NC_006883.1 + 28578 0.69 0.666078
Target:  5'- aCUGuagcaCCUGaaguuCCUGGuGGACCUGGAGg -3'
miRNA:   3'- aGGC-----GGACcu---GGACCuCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 223079 0.8 0.162563
Target:  5'- aCCaGCa-GGACCaGGAGGACCUGGAGg -3'
miRNA:   3'- aGG-CGgaCCUGGaCCUCCUGGACCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.